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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaggctatggcttgatttcaattttcaagttctcattgttgagtcaattttaagtgttggcacttgttgcctattaaaagAGCAATGCTCTGTTTAGGGATGGTCTGCAGCCACTGGATCTTGAGGTTGGACAATGGCTGCGGAGACATGCATCTGGGATACATACCATTGTAGCAATGA

Basic information

species Oryza sativa
transcript LOC_Os01g12540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g12540.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G848602_T01 (Zea mays), 3'ss of exon 3
gtgagtaggctatggcttgatttcaattttcaagttctcattgttgagtcaattttaagtgttggcacttgttgcctattaaaagAGCAATGCTCTGTTTAGGGATGGTCTGCAGCCACTGGATCTTGAGGTTGGACAATGGCTGCGGAGACATGCATCTGGGATACATACCATTGTAGCAATGA-----------------
||| ||||  ||       |||    |  ||  ||| ||||    || ||| ||  ||  || |  || ||| ||||| |||||  ||||  |||| |  ||||||||||| ||||| ||||||||||||||||| ||||||||||| |  ||||||||||| ||||||||  |||| |||||||                 
gtgggtagaata-------attcttgtgatcctgttttcatcacggaatcagttgaaaacgtggttacctgtggcctagtaaaattgcaactctctttgaagGGATGGTCTTCAGCCGCTGGATCTTGAGGTTGGGCAATGGCTGCGCAAGCATGCATCTGGTATACATACGCTTGTTGCAATGAACAAGTCCGAGTCACTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagttctcattgttgagtcaattttaagtgttggcacttgttgcctattaaaagAGCAATGCTCTGTTTAGGGATGGTCTGCAGCCACTGGATCTTGAGGTTGGACAATGGCTGCGGAGACATGCATCTGGGATACATACCATTGTAGCAATGA
                  tcaattttaa  TA-rich tract