1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgattacacagattttcactcatatatcatttttgttttcagattagcttagtgatatcccttatatttagtaccaaagtgtatactggttttgttttgtactactgatatgcatgtttagtcattgcattagtattactggttttctttttgaaagtttgccatatgttgacatgaacctttatttggcagCACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCT
species | Oryza sativa |
transcript | LOC_Os01g11980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAG CACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCEST: gi|88491714|gb|CI428986.1|CI428986
genomic: ATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAGgtgattacac ... tatttggcagCACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCC
EST: GGAAACATCCTAGCAGTTGGGAG CACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCEST: gi|88303244|gb|CI668892.1|CI668892
genomic: GGAAACATCCTAGCAGTTGGGAGgtgattacac ... tatttggcagCACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCC
EST: ATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAG CACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCEST: gi|33660828|gb|CF291795.1|CF291795
genomic: ATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAGgtgattacac ... tatttggcagCACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCC
EST: ATCAAATTTGCAGTCAT-TTTACATTTGGAAACATCCTAGCAGTT-GG-G ---AGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCC
genomic: ATCAAATTTGCAGTCATGTTTACATTTGGAAACATCCTAGCAGTTGGGAGgtgattacac ... tatttggcagCACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCC
actggttttctttttgaaagtttgccatatgttgacatgaacctttatttggcagCACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCT
tgttgac putative branch site (score: 4)
cctttattt putative PPT
ttttctttttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattacacagattttcactcatatatcatttttgttttcagattagcttagtgatatcccttatatttagtaccaaagtgtatactggttttgttttgtactactgatatgcatgtttagtcattgcattagtattactggttttctttttgaaagtttgccatatgttgacatgaacctttatttggcagCACAGCTTTCCTAATAGGGCCAAGTCAACAGTTGAGGATGATGCTTGACCCAGTTCGTGTGTATGCAACAGCTATTTACGGTGGATTTGTTTTTCTGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA