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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagctagcccgtcttctccgactccggcgactccaattcttgatttctttccaccacgatttctcattgcatcatggattggtggtgcagAAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCGATCGGGTGCTTCCCGGTGTACCTCTCCATCTTCCGGAAGCAGCCGGAGA

Basic information

species Oryza sativa
transcript LOC_Os01g11650.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29679644|gb|CB675919.1|CB675919
EST:     TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAG                         AAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
genomic: TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAGgcaagctagc ... ggtggtgcagAAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
EST: gi|29613920|gb|CB618933.1|CB618933
EST:     TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAG                         AAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
genomic: TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAGgcaagctagc ... ggtggtgcagAAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
EST: gi|29638553|gb|CB643562.1|CB643562
EST:     TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAG                         AAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
genomic: TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAGgcaagctagc ... ggtggtgcagAAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
EST: gi|117238603|gb|CT842448.1|CT842448
EST:     TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAG                         AAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
genomic: TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAGgcaagctagc ... ggtggtgcagAAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
EST: gi|29669794|gb|CB666069.1|CB666069
EST:     TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAG                         AAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG
genomic: TGCACACCTTCGTCCCCGACGTCGTTGACTCCATCGGCAAGGGCATCGAGgcaagctagc ... ggtggtgcagAAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttgatttctttccaccacgatttctcattgcatcatggattggtggtgcagAAGCTGATCGAGGAAGGGGCGGTGGAGCTGGTGGTGCCCGGGGTGCTGCCGATCGGGTGCTTCCCGGTGTACCTCTCCATCTTCCGGAAGCAGCCGGAGA
  tcttgat  putative branch site (score: 4)
       atttcttt  TA-rich tract