1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatgtcttgcctcaggtttatcatagtatagtttcccaatttacagtatacccttttctgataaatgttgaatttgactgaaaagtggagcatttgttttttttttctttatgatgcagAAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCCAGGCTTGTATTCCAAAAGATACTGCTGTACTTTGGAATCCTGAATTTGT
species | Oryza sativa |
transcript | LOC_Os01g10690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAG AAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAEST: gi|88731234|gb|CI754847.1|CI754847
genomic: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAGgtaatgtctt ... tatgatgcagAAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCA
EST: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAG AAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCCEST: gi|88717869|gb|CI739381.1|CI739381
genomic: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAGgtaatgtctt ... tatgatgcagAAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCC
EST: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAG AAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAEST: gi|58687559|gb|CK076246.1|CK076246
genomic: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAGgtaatgtctt ... tatgatgcagAAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAA
EST: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAG AAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCCEST: gi|88725034|gb|CI748293.1|CI748293
genomic: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAGgtaatgtctt ... tatgatgcagAAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCC
EST: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAG AAGCAAGGCAAGAATTTAAAGATEST: gi|66917469|gb|CX104317.1|CX104317
genomic: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAGgtaatgtctt ... tatgatgcagAAGCAAGGCAAGAATTTAAAGAT
EST: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAG AAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCCEST: gi|88724862|gb|CI748121.1|CI748121
genomic: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAGgtaatgtctt ... tatgatgcagAAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCC
EST: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAG AAGCAAGGCAAG
genomic: GAACCCCACAAATTATTGTGTAAAACTCACTTCAGGCCATAAACTTGAAGgtaatgtctt ... tatgatgcagAAGCAAGGCAAG
atgttgaatttgactgaaaagtggagcatttgttttttttttctttatgatgcagAAGCAAGGCAAGAATTTAAAGATTCTTGTTCAGTTCAAGTGTACAGTATCCAGGCTTGTATTCCAAAAGATACTGCTGTACTTTGGAATCCTGAATTTGT
atttgac putative branch site (score: 4)
catttgtttttttttt putative PPT
atttgttttttttttc TA-rich tract