1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatggtttctttctcaatttgagtatacctcctaagagtaattttgttgctccgcagatgtccaaaaacttatgcctcctttttctctccgtgtttaatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGC
species | Oryza sativa |
transcript | LOC_Os01g10450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: NTTTCGATGACTTAACCCCTCTCCAGGCGGNTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGEST: gi|88690023|gb|CI734102.1|CI734102
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGEST: gi|88481368|gb|CI418639.1|CI418639
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGEST: gi|86428281|gb|CI074962.1|CI074962
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGEST: gi|88219042|gb|CI220602.1|CI220602
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CTTTCGATGACTTAACCCCTCTTCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGEST: gi|88263692|gb|CI366593.1|CI366593
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATTTCCAATGGCTCTGAGACCGTTGEST: gi|58588545|gb|CF986853.1|CF986853
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGEST: gi|88506765|gb|CI434271.1|CI434271
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGEST: gi|55410740|gb|CV723116.1|CV723116
genomic: CCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
EST: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGG CATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
genomic: CTTTCGATGACTTAACCCCTCTCCAGGCGGCTTATGCTGTTGCAACTAGGgtaatggttt ... aatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTG
ccgcagatgtccaaaaacttatgcctcctttttctctccgtgtttaatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGC
gtttaat putative branch site (score: 4)
cctcctttttctctcc CT-rich tract
tgtttaatttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggtttctttctcaatttgagtatacctcctaagagtaattttgttgctccgcagatgtccaaaaacttatgcctcctttttctctccgtgtttaatttttcagCATGCGCGACCAGTAATTCCTCCAGAATGTCCAATGGCTCTGAGACCGTTGATCGAACAGTGTTGCTCATTGCAGCCCGAAAAGAGGCCTGATTTCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG