Sequence
atgc intronic sequence ATGC exonic sequence...tagtacagtttgcatacaaaatcttcatgctacggcttgctgcttcatatgccattttatccttatctacttcatttgatgcatccatgttttatttcagGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCTGACTTTGTGGAA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g10280.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g10280.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G133121_T02 (Zea mays), 3'ss of exon 3
----------tagtacagtttgcatacaaaatcttcatgctacggcttgctgcttcatatgccattttatccttatctacttcatttgatgcatccatgttttatttcagGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCTGACTTTGTGGAA
| | | || | || || | | | || | | || ||| | || | || || || || ||| | | ||| |||||||||||||||||||||| |||||||||| || | || || || |||||||| |||||
gtaagctgatcactgctacttattcatctgattttgttacgccaact-gtaacactttaacaaattgtctcactga-tagtttgtt--gtgtatcggtaatcaattgcagGACAAGTACAGGCAGAAAAAGCATTTCTCAAGATACGAGATCCCATTGCCTGACTTCATGGAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|66917582|gb|CX104430.1|CX104430EST: AACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAA GACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCT
genomic: AACAGGGCATCGATTGTGAGCCCAAAGCCTCCACCATCATGATTATTCAAgtaaactttc ... tttatttcagGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catatgccattttatccttatctacttcatttgatgcatccatgttttatttcagGACAAGTACAGGCAGAAAACTCATTTCTCAAAATTTGGAATTCCGTTACCTGACTTTGTGGAA
atttgat putative branch site (score: 5)
ttttatttc putative PPT
atgttttattt TA-rich tract