1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aattttgaagtgtacagatcatgtcctttttctatcttatcttgactgaccttatatcttgagtgtactttataagaaataataaagtctcctgttgcagCTTCCTCCTAGGACTATACATATCCGACCATCAATGTTAAAAATAAAAACTTATCCAGAATTATCTGGTGTCCAATCTGTCAACTCATTGGACATAGTCT
species | Oryza sativa |
transcript | LOC_Os01g10140.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTACAATGGATCTGCTGTAAAGGGAACAGTCCTAGTTGACAAGCGG CTTCCTCCTAGGACTATACATATCCGACCATCAATGTTAAAAATAAAAACT
genomic: TGTTCTACAATGGATCTGCTGTAAAGGGAACAGTCCTAGTTGACAAGCGGgtatgcactg ... cctgttgcagCTTCCTCCTAGGACTATACATATCCGACCATCAATGTTAAAAATAAAAACT
ctgaccttatatcttgagtgtactttataagaaataataaagtctcctgttgcagCTTCCTCCTAGGACTATACATATCCGACCATCAATGTTAAAAATAAAAACTTATCCAGAATTATCTGGTGTCCAATCTGTCAACTCATTGGACATAGTCT
tctcctgtt CT-rich tract
tgtactttataagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttgaagtgtacagatcatgtcctttttctatcttatcttgactgaccttatatcttgagtgtactttataagaaataataaagtctcctgttgcagCTTCCTCCTAGGACTATACATATCCGACCATCAATGTTAAAAATAAAAACTTATCCAGAATTATCTGGTGTCCAATCTGTCAACTCATTGGACATAGTCT
- - - - - - - - - -catgtcc
- - - - - - - - - - - - - - - - - - - - -ttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa