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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgagagagagagagagagagagagagagtttgcaattcttgctttgcttggctcgaacgccatgcatggtggactgatcgagatggcggcggcttgcttggccaccattgttgcttgcagGCGATGGCGAGCTTCATGGGGAAGATACGCGGCGGCAAGGCGAGGTTTGACCCCGACCACATCGTGCTCACCGCCGGCGCCACCGCCGCCAACGAGCTCC

Basic information

species Oryza sativa
transcript LOC_Os01g09700.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09700.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G163015_T01 (Zea mays), 3'ss of exon 1
gtacgtgagagagagagagagagagagagagagtttgcaattcttgctttgcttggctcgaacgccatgcatggtggactg-atcgagatggcggcggcttgcttg-gccaccattgttgcttgcagGCGATGGCGAGCTTCATGGGGAAGATACGCGGCGGCAAGGCGAGGTTTGACCCCGACCACATCGTGCTCACCGCCGGCGCCACCGCCGCCAACGAGCTCC
                      | | | |         |   | |||| |||| | || |  ||   | |  | | |||     |  ||     ||  | | ||   | |  |||| |||||||||||||||||| | |||||||| |||| |  | |||||||||||  ||||||||||||||| |||||||||||||||||||||||| || || |||||||| |
----------------------gtgcgtggtgaccccgagcgcctgctctgctcgtcttgttcggtgtcctggatagaccctgcctggacaagtgcaacgtactgacggcgtcatt-ttgcttgcagGCGATGGCCAACTTCATGGAGAAGGTTAGGGGCGGCAAGGCCCGGTTTGACCCCGACCGCATCGTGCTCACCGCCGGCGCCACGGCAGCTAACGAGCTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtggactgatcgagatggcggcggcttgcttggccaccattgttgcttgcagGCGATGGCGAGCTTCATGGGGAAGATACGCGGCGGCAAGGCGAGGTTTGACCCCGACCACATCGTGCTCACCGCCGGCGCCACCGCCGCCAACGAGCTCC
      gactgat  putative branch site (score: 3)