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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgctatgcttcttattgccatttaacattcatgtttagtttattagaacaaatacacctaatggtaactaatttaactgtttgcaaatttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCATCAATACCAGACTTTGCGCAGGAAACTAGAGTGATGATGTTTGGGATTT

Basic information

species Oryza sativa
transcript LOC_Os01g09510.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4714051|gb|AU058018.1|AU058018
EST:     CGAAGAGAAGGAAGAAAGTGATGAT                         GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: CGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: gi|3760653|gb|C97907.1|C97907
EST:     CTGAGGCGAAGAANGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT                         GNCATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: gi|86855151|gb|CI263218.1|CI263218
EST:     CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT                         GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: gi|88995211|gb|CI036786.1|CI036786
EST:     TGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT                         GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: TGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: gi|88446889|gb|CI528932.1|CI528932
EST:     CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT                         GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: gi|86534426|gb|CI174632.1|CI174632
EST:     CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGAT                         GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: CTGAGGCGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
EST: gi|425968|gb|D22650.1|D22650
EST:     TGAGGCGAAGAAAGAAGATTAAGGTCGAAGAGAAGGAAGAAAGTGATGAT                         GACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA
genomic: TGAGGCGAAGAAAGAAGA-TAAGGTCGAAGAGAAGGAAGAAAGTGATGATgtaagaccaa ... ttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaacaaatacacctaatggtaactaatttaactgtttgcaaatttatttacagGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGGTCACCTCTTCTATCATCAATACCAGACTTTGCGCAGGAAACTAGAGTGATGATGTTTGGGATTT
                                            tttattt  CT-rich tract
                         taatttaactgtttgc  TA-rich tract