1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcatcttgaaaatattatttgtatttcgattgcatctccttttttatgctaatatcatttacattcaaggcttctgttctgaaaatttttatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCCTGGCACTAGTGTGGAGGTTTTAGAACAG
species | Oryza sativa |
transcript | LOC_Os01g09120.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29660992|gb|CB657267.1|CB657267
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|86505958|gb|CI148591.1|CI148591
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29657673|gb|CB653948.1|CB653948
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29680769|gb|CB677044.1|CB677044
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29662742|gb|CB659017.1|CB659017
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|86527492|gb|CI167698.1|CI167698
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: CCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|31818552|gb|CD645551.1|CD645551
genomic: CCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29640574|gb|CB645583.1|CB645583
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29655805|gb|CB652080.1|CB652080
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATGTATGGTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|14571448|gb|BI118816.1|BI118816
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|38474285|gb|CF958417.1|CF958417
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|88228766|gb|CI228246.1|CI228246
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29660961|gb|CB657236.1|CB657236
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCEST: gi|29638115|gb|CB643124.1|CB643124
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
EST: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAG GTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
genomic: GCCTGACATGCCGATCATCTATGCTAGTGATGCTTTTCTATCACTAACAGgtacttgaat ... tatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTC
tatgctaatatcatttacattcaaggcttctgttctgaaaatttttatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCCTGGCACTAGTGTGGAGGTTTTAGAACAG
tgctaat putative branch site (score: 2)
tttttatc putative PPT
taatatcatttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatcttgaaaatattatttgtatttcgattgcatctccttttttatgctaatatcatttacattcaaggcttctgttctgaaaatttttatcatccagGTTACTCAAGAGAAGAAATCTTGGGCTGTAACTGCAGATTCTTGAATGGTCCTGGCACTAGTGTGGAGGTTTTAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - tcttgaa
- - - - - - - - - - - - - - - -tgcatct
- - - - - - - - - - - - - - - - - - - - - - ttatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcaa