1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtactgtatctctaagcatgtttagtatcttctgtgataaaatctttctccagtgtgttaacttttgcattctttttcttgcatgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG
species | Oryza sativa |
transcript | LOC_Os01g08700.6 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTAEST: gi|29636922|gb|CB641931.1|CB641931
genomic: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
EST: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTAEST: gi|88369882|gb|CI680559.1|CI680559
genomic: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
EST: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTAEST: gi|29646260|gb|CB651267.1|CB651267
genomic: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
EST: AGTGAGCAATTCCNTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCNTTGTAGATGAAGTAEST: gi|88587781|gb|CI705554.1|CI705554
genomic: AGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
EST: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTAEST: gi|88361618|gb|CI680183.1|CI680183
genomic: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
EST: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTAEST: gi|88369175|gb|CI680281.1|CI680281
genomic: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
EST: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTAEST: gi|88454127|gb|CI694894.1|CI694894
genomic: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
EST: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAG CTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
genomic: TTGGCCAGTTTACAGCTGACAGTGAGCAATTCCCTGAAGATATAGCTCAGgtactgtatc ... atgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTA
taaaatctttctccagtgtgttaacttttgcattctttttcttgcatgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG
tgttaac putative branch site (score: 2)
ttctttttcttgcat putative PPT
ttaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtatctctaagcatgtttagtatcttctgtgataaaatctttctccagtgtgttaacttttgcattctttttcttgcatgcttgcagCTAATTCAAAGTTGCTATCCATCAAAAGAAAAGCGCCTTGTAGATGAAGTATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA