1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaactgtgcttgacataagagattgtacttacttactacatagtagttacttactactctacaactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATG
species | Oryza sativa |
transcript | LOC_Os01g08200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGAATGGGCTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAG GTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAAEST: gi|33678119|gb|CF306358.1|CF306358
genomic: TGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGgtaactgtgc ... aactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAA
EST: TGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAG GTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAAEST: gi|33677994|gb|CF306233.1|CF306233
genomic: TGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGgtaactgtgc ... aactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAA
EST: TGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAG GTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAAEST: gi|58663886|gb|CK052572.1|CK052572
genomic: TGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGgtaactgtgc ... aactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAA
EST: ATTTACTTCTCTCCCTTTTCCATCAA-TGACTTGCCAGAGAAG GTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAAEST: gi|58671015|gb|CK059701.1|CK059701
genomic: ATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGgtaactgtgc ... aactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAA
EST: TGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAG GTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAA
genomic: TGCCTGAATTTACTTCTCTCCCTTTTCCATCAATTGACTTGCCAGAGAAGgtaactgtgc ... aactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAA
agagattgtacttacttactacatagtagttacttactactctacaactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATG
tacttac putative branch site (score: 24)
ttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgtgcttgacataagagattgtacttacttactacatagtagttacttactactctacaactccacagGTTAGGATTGCAGTTGACAAAGTTATACTTGCCGAAAGTGCTGATCGAAAACAACAATTGGCTTCTTGGGTTGCTGACAAGAAAAAAGTCAGTGCACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA