1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtcgccgattgtcttcttgtctgctctgttctttccttggctcctcgccttcttcatgtgctcagttgtgctaaattttgatgagttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATGTACGTCAAGACTGAAGTG
species | Oryza sativa |
transcript | LOC_Os01g07720.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAA ATTTTGTTTGGTGTCCTGTACATEST: gi|88765491|gb|CI774585.1|CI774585
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACAT
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCEST: gi|88312323|gb|CI582661.1|CI582661
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCC
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATGEST: gi|88576279|gb|CI670424.1|CI670424
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATG
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATGEST: gi|88309854|gb|CI656988.1|CI656988
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATG
EST: TTACTCCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTEST: gi|88763364|gb|CI772825.1|CI772825
genomic: TTACTCC-GCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCT
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTEST: gi|88592824|gb|CI710953.1|CI710953
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGT
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTEST: gi|88449328|gb|CI582200.1|CI582200
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTT
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGGTGATGEST: gi|88327935|gb|CI648334.1|CI648334
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATG
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTEST: gi|88763578|gb|CI773025.1|CI773025
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCT
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTEST: gi|88741433|gb|CI764941.1|CI764941
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCT
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGEST: gi|38472084|gb|CF956215.1|CF956215
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTG
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATGEST: gi|88368729|gb|CI645151.1|CI645151
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATG
EST: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATGEST: gi|88337341|gb|CI629631.1|CI629631
genomic: TTTACTCCGCCATCAAGCTTCTCACCGCCGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATG
EST: TTACTCCGCCATCAAGCTTCTCACCGCNCGGCCAAGTCTTCCCCGCGCAG ATTTTGTTTGGTGTC
genomic: TTACTCCGCCATCAAGCTTCTCACCGC-CGGCCAAGTCTTCCCCGCGCAGgtcgccgatt ... gttgttgcagATTTTGTTTGGTGTC
gctcctcgccttcttcatgtgctcagttgtgctaaattttgatgagttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATGTACGTCAAGACTGAAGTG
taaattttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgccgattgtcttcttgtctgctctgttctttccttggctcctcgccttcttcatgtgctcagttgtgctaaattttgatgagttgttgcagATTTTGTTTGGTGTCCTGTACATTGTGAACCTTAGCCTTGTTCTGCTGATGTACGTCAAGACTGAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG