1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatttttccttacactttctgctattctgtacgttgttactattgttcatatatactgtagccttatctaactctccctgaaccttttttttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGATTCCTTCGCGAAGAAAGCGCAGATGTACTACCAGAGGCGTCCAATGCT
species | Oryza sativa |
transcript | LOC_Os01g07360.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|88583313|gb|CI700785.1|CI700785
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGEST: gi|33677737|gb|CF305976.1|CF305976
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATG
EST: CAGTCACATTAGCCCTAAGAACCCT-AATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAATGATATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|58671469|gb|CK060155.1|CK060155
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: TAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGEST: gi|88590793|gb|CI707681.1|CI707681
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTAEST: gi|33797289|gb|CF324507.1|CF324507
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTA
EST: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAG AAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
genomic: CAGTCACATTAGCCCTAAGAACTCTAAATGGCTTGCAGAAAATCTTGAAGgtgagctgaa ... ttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCG
ttcatatatactgtagccttatctaactctccctgaaccttttttttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGATTCCTTCGCGAAGAAAGCGCAGATGTACTACCAGAGGCGTCCAATGCT
atctaac putative branch site (score: 2)
ctctccctgaaccttt CT-rich tract
aacctttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttccttacactttctgctattctgtacgttgttactattgttcatatatactgtagccttatctaactctccctgaaccttttttttttttgcagAAATGGACAAGCAAGTGAAGGAAATGCTGCAGCTTATTGAGGAGGATGGCGATTCCTTCGCGAAGAAAGCGCAGATGTACTACCAGAGGCGTCCAATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - ttctgct
- - - - - - - - - - - - - ctgtacg
- - - - - - - - - - - - - - - - - tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtagc