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...atttctctgaatttctgatactacttacatagttaagtcgttttcaccgtgaagtcttgaatacatatttagatattaaaaaaatgttttctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACTCTGGGATATGCAAAGGCTGCTAAGGATAAGCGAGTCATTGCTTGCATC
species | Oryza sativa |
transcript | LOC_Os01g06660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGG GTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACEST: gi|88307050|gb|CI639486.1|CI639486
genomic: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGgtaagttcct ... ctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAAC
EST: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGG GTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACEST: gi|88329585|gb|CI650040.1|CI650040
genomic: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGgtaagttcct ... ctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAAC
EST: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGG GTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACEST: gi|58689676|gb|CK078363.1|CK078363
genomic: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGgtaagttcct ... ctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAAC
EST: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGG GTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACEST: gi|88340638|gb|CI647442.1|CI647442
genomic: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGgtaagttcct ... ctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAAC
EST: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGG GTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAAC
genomic: GGAGACTCTTGGTTTAATTGCCAGAAGCTAAAGCTACCAGAGGGCTGTGGgtaagttcct ... ctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAAC
accgtgaagtcttgaatacatatttagatattaaaaaaatgttttctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACTCTGGGATATGCAAAGGCTGCTAAGGATAAGCGAGTCATTGCTTGCATC
tgttttctctt CT-rich tract
tcttgaatacatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttctctgaatttctgatactacttacatagttaagtcgttttcaccgtgaagtcttgaatacatatttagatattaaaaaaatgttttctcttgacagGTACGAATTTCAAATGCAATATGGATCAATTGGTTGGTCGGTAGGTGCAACTCTGGGATATGCAAAGGCTGCTAAGGATAAGCGAGTCATTGCTTGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - ctgatac
- - - - - - - - - - - -cttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa