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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttaccgcaggctctctttctgtgagttggtagaaaaaaaaagtttggtgctggtctggctccatatgttgttgattttgtttgttgttttgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATATGATATGCCATCGTCACTATAAGCTCTACCCTACCAAGGTTGCACCACA

Basic information

species Oryza sativa
transcript LOC_Os01g05510.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58652928|gb|CK041608.1|CK041608
EST:     CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG                         CTGAGCCAAAACTGATGGCCGATGATCCCCTGTCATCACATGAGAAACATA
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: gi|58596595|gb|CK007123.1|CK007123
EST:     CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG                         CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: gi|88400319|gb|CI591009.1|CI591009
EST:     CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG                         CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: gi|58689352|gb|CK078039.1|CK078039
EST:     CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG                         CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: gi|58667230|gb|CK055916.1|CK055916
EST:     CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG                         CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
EST: gi|117246389|gb|CT843250.1|CT843250
EST:     CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAG                         CTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA
genomic: CGAAGGCTCTTCTGAGCAAGGATGCTCGGCGAAAGCTAAGGAAATTTCAGgtatagatct ... tgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtgctggtctggctccatatgttgttgattttgtttgttgttttgaattgcagCTGAGCCAAAACTGATGGCCGATGATCCAATGTCATCACATGAGAAACATATGATATGCCATCGTCACTATAAGCTCTACCCTACCAAGGTTGCACCACA
                        tgttgat  putative branch site (score: 4)
                                       ttgtttt  putative PPT
                             attttgttt  TA-rich tract