1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttatctttcagtatggtcatctttgtagtgcctacattaatatttcacttttgctatatgttcttattgtaaacttactaatggggagcttctcctgcagTCTTCGCAGCTTGGAAATCAATTAAATCTGACATGCGAAAGCAATGGAAAGACTGAGGCATATACTCTCAACAACCCAAATAGCACGGAAGCAATTAAAC
species | Oryza sativa |
transcript | LOC_Os01g05430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGTACCTACTTCAAAGTGGAGTTGCAACACGCCAAGCAACTATTGCATG TCTTCGCAGCTTGGAAATCAATTAAATCTGACATGCGAAAGCAATGGAAAGEST: gi|88490179|gb|CI427451.1|CI427451
genomic: GTGTACCTACTTCAAAGTGGAGTTGCAACACGCCAAACAACTATTGCATGgtaagttctt ... tctcctgcagTCTTCGCAGCTTGGAAATCAATTAAATCTGACATGCGAAAGCAATGGAAAG
EST: GTGTACCTACTTCAAAGTGGAGTTGCAACACGCCAAACAACTATTGCATG TGTTCGCAGCTTGGAAATCAATTANATCTGACATGCGAAAGCAATGGAAAG
genomic: GTGTACCTACTTCAAAGTGGAGTTGCAACACGCCAAACAACTATTGCATGgtaagttctt ... tctcctgcagTCTTCGCAGCTTGGAAATCAATTAAATCTGACATGCGAAAGCAATGGAAAG
cacttttgctatatgttcttattgtaaacttactaatggggagcttctcctgcagTCTTCGCAGCTTGGAAATCAATTAAATCTGACATGCGAAAGCAATGGAAAGACTGAGGCATATACTCTCAACAACCCAAATAGCACGGAAGCAATTAAAC
tactaat putative branch site (score: 6)
cttctcctgc putative PPT
tatatgttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatctttcagtatggtcatctttgtagtgcctacattaatatttcacttttgctatatgttcttattgtaaacttactaatggggagcttctcctgcagTCTTCGCAGCTTGGAAATCAATTAAATCTGACATGCGAAAGCAATGGAAAGACTGAGGCATATACTCTCAACAACCCAAATAGCACGGAAGCAATTAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - -gtgccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctt