1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaactaatcgtcttggatttcagtttctgattgctatgatcgatggtgtgatcgaagagagagatgttttgatggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGTGCGACGGAGGAGCGTGTCACCCGACGGAGGCGCAGACGGGGGTGGTGT
species | Oryza sativa |
transcript | LOC_Os01g04950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGEST: gi|29646409|gb|CB651416.1|CB651416
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGEST: gi|58690132|gb|CK078819.1|CK078819
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGEST: gi|117229908|gb|CT846338.1|CT846338
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGEST: gi|58664808|gb|CK053494.1|CK053494
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGEST: gi|29661642|gb|CB657917.1|CB657917
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG GGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGEST: gi|58673905|gb|CK062591.1|CK062591
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCG
EST: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTG GGGTTTGGGCGTTGCTTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGEST: gi|88400151|gb|CI590841.1|CI590841
genomic: ACATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCTGgtaactaatc ... atggttgcagGG-TTTGG-CGTTGCT-GACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCG
EST: CATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCCCTG GGTTTGGCGTTGGTGACAATGGCGTCGTCGGTGAAGGGGC
genomic: CATGGGCAGGTTCTGGACCATTGCCAGCTTCATGATCATCTACATCC-TGgtaactaatc ... atggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGC
ctgattgctatgatcgatggtgtgatcgaagagagagatgttttgatggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGTGCGACGGAGGAGCGTGTCACCCGACGGAGGCGCAGACGGGGGTGGTGT
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaatcgtcttggatttcagtttctgattgctatgatcgatggtgtgatcgaagagagagatgttttgatggttgcagGGTTTGGCGTTGCTGACAATGGCGTCGTCGGTGAAGGGGCTGGTGCCGGCGTGCGACGGAGGAGCGTGTCACCCGACGGAGGCGCAGACGGGGGTGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG