1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagatactttctctacacattatgatttggactggtaatattttcagtgaatttcatctatgctatttctgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAATACCAAAGCTGCACAAGCTCTAAGTGAAGTGCTAAGGGTTGAGGAGACA
species | Oryza sativa |
transcript | LOC_Os01g04570.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAAEST: gi|88252659|gb|CI351087.1|CI351087
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
EST: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAAEST: gi|86861609|gb|CI329448.1|CI329448
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
EST: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAAEST: gi|29630493|gb|CB635502.1|CB635502
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
EST: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACT AGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
genomic: AGTTTGGATGAACTGGAAATGCCACCAAAACAAAATTTCAGTGAATTACTgtaagatact ... tgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAA
atttggactggtaatattttcagtgaatttcatctatgctatttctgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAATACCAAAGCTGCACAAGCTCTAAGTGAAGTGCTAAGGGTTGAGGAGACA
ctatttctgtttttc CT-rich tract
taatattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatactttctctacacattatgatttggactggtaatattttcagtgaatttcatctatgctatttctgtttttcagAGAACATCCAGCTCAGGAGATTAACACAGAAAGTACGAGTTCTACTATAAATACCAAAGCTGCACAAGCTCTAAGTGAAGTGCTAAGGGTTGAGGAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA