1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatatatgaaatagactaaatgaccaactcctaactagtcagaaatgactagtaagtctacaagctttctactcattgatcgtctttactatgttatcagGATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACTTGTTCAGTATGTCTTATGTAAAATCACATTTAATTTAATCAAGAACTGA
species | Oryza sativa |
transcript | LOC_Os01g04110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAG GATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACTEST: gi|88509382|gb|CI436888.1|CI436888
genomic: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAGgtaaattcta ... atgttatcagGATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACT
EST: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAG GATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACTEST: gi|88508664|gb|CI436170.1|CI436170
genomic: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAGgtaaattcta ... atgttatcagGATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACT
EST: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAG GATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACTEST: gi|88477869|gb|CI415140.1|CI415140
genomic: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAGgtaaattcta ... atgttatcagGATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACT
EST: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAG GATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACT
genomic: GGAGGCACATTACTACTCATCTGTTGTGCGGACACCACCGGATGAATGAGgtaaattcta ... atgttatcagGATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACT
tgactagtaagtctacaagctttctactcattgatcgtctttactatgttatcagGATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACTTGTTCAGTATGTCTTATGTAAAATCACATTTAATTTAATCAAGAACTGA
cattgat putative branch site (score: 1)
tttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatgaaatagactaaatgaccaactcctaactagtcagaaatgactagtaagtctacaagctttctactcattgatcgtctttactatgttatcagGATTATCCCTTCTGAATAGGCGTGGACTTTAAAGCAGTAGTGACAATGACTTGTTCAGTATGTCTTATGTAAAATCACATTTAATTTAATCAAGAACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -gaaataga
- - - - - - - - - - - - - - - - - - - - agaaatga