1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cctgcaactctttctctacacacaatggggctcacacaacaaaaaatatttacagaaagtttactgatcagttgcgtttgctggaacggttaatttgcagAGTCGTACAGGTCGATAAAGTATCAGCCGCGATCGGTGTCGGAGCGGATCGTGCAGAAGCTGACGCCGAAGCCGCGGCCGGCGATCGGGCTGAGGGACCC
species | Oryza sativa |
transcript | LOC_Os01g03870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
atatttacagaaagtttactgatcagttgcgtttgctggaacggttaatttgcagAGTCGTACAGGTCGATAAAGTATCAGCCGCGATCGGTGTCGGAGCGGATCGTGCAGAAGCTGACGCCGAAGCCGCGGCCGGCGATCGGGCTGAGGGACCC
ttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgcaactctttctctacacacaatggggctcacacaacaaaaaatatttacagaaagtttactgatcagttgcgtttgctggaacggttaatttgcagAGTCGTACAGGTCGATAAAGTATCAGCCGCGATCGGTGTCGGAGCGGATCGTGCAGAAGCTGACGCCGAAGCCGCGGCCGGCGATCGGGCTGAGGGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
cctgcaa
- - - - - - - - -acacaca
- - - - - - - - - - - - -tggggct
- - - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgctg