1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagcgccacgtcatatgctcgacgtgcccgttcgttatcgtgttcattgatcagttgctccatttctaatttattttgactgtgcagATCCTGGATCACGAAGACAACGCCATGATCAGGCCTCTGAAGCTGCTTCCATGAACAAGAAACGTAGTGCTGATCGATGAGAATATGAGATGAAGAAGCT
species | Oryza sativa |
transcript | LOC_Os01g03640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGGATTCGTCTACCACTGCCAC ATCCTGGATCACGAAGACAACGCCATGATCAGGCCTCTGAAGCTGCTTCCAEST: gi|88383402|gb|CI540815.1|CI540815
genomic: CGGGATTCGTCTACCACTGCCACgtaagcgcca ... gactgtgcagATCCTGGATCACGAAGACAACGCCATGATCAGGCCTCTGAAGCTGCTTCCA
EST: GTCTACCACTGCCAC ATCCTGGATCACGAAGACAACGCCATGATCAGGCCTCTGAAGCTGCTTCCA
genomic: GTCTACCACTGCCACgtaagcgcca ... gactgtgcagATCCTGGATCACGAAGACAACGCCATGATCAGGCCTCTGAAGCTGCTTCCA
cgttatcgtgttcattgatcagttgctccatttctaatttattttgactgtgcagATCCTGGATCACGAAGACAACGCCATGATCAGGCCTCTGAAGCTGCTTCCATGAACAAGAAACGTAGTGCTGATCGATGAGAATATGAGATGAAGAAGCT
atttctaatttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgccacgtcatatgctcgacgtgcccgttcgttatcgtgttcattgatcagttgctccatttctaatttattttgactgtgcagATCCTGGATCACGAAGACAACGCCATGATCAGGCCTCTGAAGCTGCTTCCATGAACAAGAAACGTAGTGCTGATCGATGAGAATATGAGATGAAGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC