1 5' 3' | 2 5' 3' | 3 5' 3' |
...agggatgagtacaagattgcatgcataatatgaaaaagtagtatatgtgaataaaaggatggatatgatatgaaatgaaatgggatatatggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAGGTACGTGCTGGTGCTGTACGAGCAGAAGGCGCGCTTCGTGGACGGCGC
species | Oryza sativa |
transcript | LOC_Os01g02120.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218499543|gb|FG954272.1|FG954272
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218495786|gb|FG965856.1|FG965856
genomic: GGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218479392|gb|FG964734.1|FG964734
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218487396|gb|FG969251.1|FG969251
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|66914461|gb|CX101309.1|CX101309
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218499952|gb|FG964309.1|FG964309
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218486167|gb|FG951231.1|FG951231
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGACGACGGTGGGGATACACAEST: gi|218495072|gb|FG958772.1|FG958772
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218484094|gb|FG956003.1|FG956003
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218483444|gb|FG953420.1|FG953420
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218482064|gb|FG957113.1|FG957113
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|88352680|gb|CI678699.1|CI678699
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGEST: gi|218479589|gb|FG967768.1|FG967768
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTG
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218491779|gb|FG963455.1|FG963455
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218493478|gb|FG952537.1|FG952537
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAEST: gi|218479879|gb|FG966076.1|FG966076
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
EST: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAG GTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
genomic: GATCGTGGTTAACATACCGGGGGGAACAGATGCATCTAAAGgtgcgttctc ... ggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACA
tgtgaataaaaggatggatatgatatgaaatgaaatgggatatatggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAGGTACGTGCTGGTGCTGTACGAGCAGAAGGCGCGCTTCGTGGACGGCGC
atatgatatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agggatgagtacaagattgcatgcataatatgaaaaagtagtatatgtgaataaaaggatggatatgatatgaaatgaaatgggatatatggggatgcagGTGAGGAGATGGTGGAGTACATGGGGCCACGGCCGACGGTGGGGATACACAGGTACGTGCTGGTGCTGTACGAGCAGAAGGCGCGCTTCGTGGACGGCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - -tgcatgc
- - - - - - - - - - - - - - -atgaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa