1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacccttgcttgatgcagtcttacactgttacttttctcttaacagtcgtaggcttgatacgatcatttactcattaacagGCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
species | Oryza sativa |
transcript | LOC_Os01g01620.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGCAATCGCACCATGCGCCCTTGCCTATCTAGTGCAGTCAAGCTCCAG GCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAGEST: gi|33681531|gb|CF309770.1|CF309770
genomic: GTGGCAATCGCACCATGCGCCCTTGCCTATCTAGTGCAGTCAAGCTCCAGgtaacccttg ... tcattaacagGCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
EST: GTGGCAATCGCACCATGCGCCCCTGCCTATCTAGTGCAGTCAAGCTCCAG GCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAGEST: gi|29668431|gb|CB664706.1|CB664706
genomic: GTGGCAATCGCACCATGCGCCCTTGCCTATCTAGTGCAGTCAAGCTCCAGgtaacccttg ... tcattaacagGCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
EST: AGTGCAGTCAAGCTTCAG GCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAGEST: gi|42591940|gb|CK738426.1|CK738426
genomic: AGTGCAGTCAAGCTCCAGgtaacccttg ... tcattaacagGCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
EST: GTGGCAATCGCACCATGCGCCCTTGCCTATCTAGTGCAGTCAAGCTCCAG GCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
genomic: GTGGCAATCGCACCATGCGCCCTTGCCTATCTAGTGCAGTCAAGCTCCAGgtaacccttg ... tcattaacagGCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
tgttacttttctcttaacagtcgtaggcttgatacgatcatttactcattaacagGCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
tttactc CT-rich tract
atcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacccttgcttgatgcagtcttacactgttacttttctcttaacagtcgtaggcttgatacgatcatttactcattaacagGCCAACGAGTTCAAAAAGGAGGACTTCAAAGGCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA