1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtactactccacatatatagcccgccttgtttgttcctactgtctccatgtctatgaattattgccgaaccattcttttgtttgttaatttatcgattcctcagATGAATGCCATGAAGGCCGCCAATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGATTGAGGACATCGAT
species | Oryza sativa |
transcript | LOC_Os01g01350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGACCAAGTCGCTTTCGCTGCCGATGGCCTCAAAGACGCTCAGCAGACC ATGAATGCCATGAAGGCCGCCAATAAAGAGCTCAAGGGAATGATGAAGACAEST: gi|163929467|gb|EG713436.1|EG713436
genomic: TCGACCAAGTCGCTTTCGCTGCCGATGGCCTCAAAGACGCTCAGCAGACCgtacgtacta ... gattcctcagATGAATGCCATGAAGGCCGCCAATAAAGAGCTCAAGGGAATGATGAAGACA
EST: CGACCAAGTTCGCTTTCGCTGCCGATGGCCTCAAAGACGCTCAGCAGACC ATGAATGCCATGAAGGCC
genomic: CGACCAAGT-CGCTTTCGCTGCCGATGGCCTCAAAGACGCTCAGCAGACCgtacgtacta ... gattcctcagATGAATGCCATGAAGGCC
gtctatgaattattgccgaaccattcttttgtttgttaatttatcgattcctcagATGAATGCCATGAAGGCCGCCAATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGATTGAGGACATCGAT
tgttaat putative branch site (score: 9)
ttcctc putative PPT
attcttttgtttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtactactccacatatatagcccgccttgtttgttcctactgtctccatgtctatgaattattgccgaaccattcttttgtttgttaatttatcgattcctcagATGAATGCCATGAAGGCCGCCAATAAAGAGCTCAAGGGAATGATGAAGACAGTCAAGATTGAGGACATCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA