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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagtgtagctgttgcagaacaattgcaggacactggcatatgagatgctaatatcaactcaattttggaattcccttctattcaggggttgcgtatatagcactcttctgacttacattgtaccccttcttgataatactctaggagttaatttattttcactggttttacacagGTATTTCATAGCTGTTCAAAAGTGCCTTGGTCTATACTCAGAGAATGGTCAATATTGCACTAATGTTGACCGATTATGCACATTGTATATCTCACTTAAA

Basic information

species Oryza sativa
transcript 13114.m00154
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: 13114.m00154 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G047093_T01 (Zea mays), 3'ss of exon 8
gtagagtgtagctgttgcagaacaattgcaggacactggcatatgagatgctaatatcaactcaattttggaattcccttctattcaggggttgcgtatatagcactcttctgacttacattgtaccccttcttgataatactctaggagttaatttattttcactggttttacacagGTATTTCATAGCTGTTCAAAAGTGCCTTGGTCTATACTCAGAGAATGGTCAATATTGCACTA---ATGTTGACCGATTATGCACATTGTATATCTCACTTAAA
                                                                        ||     |   ||||         | | ||      || | | ||| |   ||||  || ||  |      ||| || | |||   || |||||| ||  || ||| || ||||| ||||| ||||||||||||||  ||||||| || |||||||||||||   ||    ||||||| || ||| |  ||||||| | |||||||   
------------------------------------------------------------------------atctgtgtactttcaataacattatttgtactggcattat-atttataacctaccttttgttact-----cctatgaatgaatgggttctcactgtttccactcagATACTTCATTGCTGTGCAAAAGTGCCTTGGCTTATACTCTGATAATGGTCAATATTCTGCTGCTGATGTTGAGCGCTTAAGTGCATTGTACAACTCACTT---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccccttcttgataatactctaggagttaatttattttcactggttttacacagGTATTTCATAGCTGTTCAAAAGTGCCTTGGTCTATACTCAGAGAATGGTCAATATTGCACTAATGTTGACCGATTATGCACATTGTATATCTCACTTAAA
                         agttaat  putative branch site (score: 4)
                         agttaatttattttca  TA-rich tract