1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgtccccgagcacaccgcggccgtattcattctcccatctcccaaggcgagtttccactcacccgcttctttttgtcttctggtttttcttctgcctcagCGAGATCCCGTCGCGCCCCCCCTCCCCGCCATTCCAAGTCCGGCCGGTCTGAGGCCGAGGAGACGGCGACCGCGGAGGCCCGGAGGCGGGAAGCTGATCG
species | Oryza sativa |
transcript | 13114.m00092 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ggcgagtttccactcacccgcttctttttgtcttctggtttttcttctgcctcagCGAGATCCCGTCGCGCCCCCCCTCCCCGCCATTCCAAGTCCGGCCGGTCTGAGGCCGAGGAGACGGCGACCGCGGAGGCCCGGAGGCGGGAAGCTGATCG
cactcac putative branch site (score: 2)
cccgcttctttttgtc CT-rich tract
ttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtccccgagcacaccgcggccgtattcattctcccatctcccaaggcgagtttccactcacccgcttctttttgtcttctggtttttcttctgcctcagCGAGATCCCGTCGCGCCCCCCCTCCCCGCCATTCCAAGTCCGGCCGGTCTGAGGCCGAGGAGACGGCGACCGCGGAGGCCCGGAGGCGGGAAGCTGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -ccgagca
- - - - - - - - gcggccg
- - - - - - - - - - - - - - -ttctccc