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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atagttccattccaatgatatgaaccattcagctatcttgcactaatcgaaacgcatacatggacatgtgatgtattcttatttcagaaaatgcgtgcagAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAG

Basic information

species Oryza sativa
transcript 13113.m00225
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: 13113.m00225 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G017853_T01 (Zea mays), 3'ss of exon 3
atagttccattccaatgatatgaaccattcagctatcttgcactaatcgaaacgcat--------acatggacatgtgatgtattcttatttcagaaaatgcgtgcagAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAG
        | | | |||| ||  | |||||| || |||| || ||||  ||    ||        |  || |||||||||  || || ||||||||||||||||||||| | || || |||||||||||||||||||| |||||| | |||||||||||||| |||||||| ||||| |||||||||    ||||||| |||
-------gactgctatga-attcatcattcatctttcttccaataattaaattatatcttatggaatgtgaacatgtgataaatcctcatttcagaaaatgcgtgcagATTGGCAGCATCAAATTGGACTGGTGAAGGATCTTTCCTGTTTACATCAAGTACAGCTCTGTATGATTGCAGTGACAACAGCATGTGCAACGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgaaacgcatacatggacatgtgatgtattcttatttcagaaaatgcgtgcagAGTAGCTGCCTCAAATTGGACTGGTGAAGGCTCTTTCGTTTTTACATCAAGTACTGCTCTGTACGATTGTAGTGACAACGAATTGTGCAATGAG
 cactaat  putative branch site (score: 2)
                         atgtattcttattt  TA-rich tract