1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
gtatggtactgttgtgtattccaatttgaatttaaatatctcaaacgctttcaattgaccatctgttcttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCCTTTTGCAGCTAAAAAACGACAACCAGGCACATGCAGACAAAGTCAAAA
species | Oryza sativa |
transcript | LOC_Os04g51610.1 |
intron # | 29 |
splice site | 3' |
intron type | U2 |
EST: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAACEST: gi|25806928|gb|CA762889.1|CA762889
genomic: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: CCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCEST: gi|29685708|gb|CB681983.1|CB681983
genomic: CCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCEST: gi|87027607|gb|CI272372.1|CI272372
genomic: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCEST: gi|86518067|gb|CI158273.1|CI158273
genomic: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: CTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCEST: gi|58594188|gb|CF992496.1|CF992496
genomic: CTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTEST: gi|29679578|gb|CB675853.1|CB675853
genomic: GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCT
EST: GAAGGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCEST: gi|29667908|gb|CB664183.1|CB664183
genomic: GAAGGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: GAAGGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCEST: gi|218500877|gb|FG965670.1|FG965670
genomic: GAAGGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: GGAACCCTTGAATAACAAATGTCATGTGGAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTTAACTTTAGGGGCACAAGCEST: gi|29688806|gb|CB685081.1|CB685081
genomic: GGAACCCTTGA-TAACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
EST: AACAAATGTCATGCGTAGAAACTTAATCATAATG GCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
genomic: AACAAATGTCATGTGGAGAAACTTAATCATAATGgtatggtact ... cttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGC
aatttgaatttaaatatctcaaacgctttcaattgaccatctgttcttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCCTTTTGCAGCTAAAAAACGACAACCAGGCACATGCAGACAAAGTCAAAA
aattgac putative branch site (score: 29)
ccatctgttcttcctt CT-rich tract
aatttaaatatctcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtactgttgtgtattccaatttgaatttaaatatctcaaacgctttcaattgaccatctgttcttccttcagGCTCTGTTTCAAGTTATAGTCCTCCTTACTCTCAACTTTAGGGGCACAAGCCTTTTGCAGCTAAAAAACGACAACCAGGCACATGCAGACAAAGTCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT