1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
...tttgtgccaggaattgctaatacctttcaatgtgcaattcaaacagagttttttgtttctgcatgctgaagctgtcctaaccttgttaccttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG
species | Oryza sativa |
transcript | LOC_Os04g51610.1 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: AGTTGGCAGAAG GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGEST: gi|88351169|gb|CI623391.1|CI623391
genomic: AGTTGGCAGAAGgtttgttctc ... ttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG
EST: ACAGAACCACCTACTGACCATCTTATGCAGAGACCACCAGTTGGGAGAAG GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGGEST: gi|29685708|gb|CB681983.1|CB681983
genomic: ACAGAACCACCTACTGACCATCTTATGCAGAGACCACCAGTTGGCAGAAGgtttgttctc ... ttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGG
EST: ACAGAACCACCTACTGACCATCTTATGCAGAGACCACCAGTTGGCAGAAG GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGEST: gi|87027607|gb|CI272372.1|CI272372
genomic: ACAGAACCACCTACTGACCATCTTATGCAGAGACCACCAGTTGGCAGAAGgtttgttctc ... ttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG
EST: ACAGAACCACCTACTGACCATCTTATGCAGAGACCACCAGTTGGCAGAAG GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGEST: gi|58594188|gb|CF992496.1|CF992496
genomic: ACAGAACCACCTACTGACCATCTTATGCAGAGACCACCAGTTGGCAGAAGgtttgttctc ... ttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG
EST: CAGAACCACCTACTGACCATCTTATGCCAGAGACCACCAGTTGGCAGAAG GGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATGEST: gi|218500877|gb|FG965670.1|FG965670
genomic: CAGAACCACCTACTGACCATCTTATGC-AGAGACCACCAGTTGGCAGAAGgtttgttctc ... ttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG
EST: ACAGAACCACCTACTGACCATCTTATGCAGAGACCAACAGTTGGCAGAAG GGAACCCTTGAATAACAAATGTCATGTGGAGAAACTTAATCATAATG
genomic: ACAGAACCACCTACTGACCATCTTATGCAGAGACCACCAGTTGGCAGAAGgtttgttctc ... ttgttttcagGGAACCCTTGA-TAACAAATGTCATGTGGAGAAACTTAATCATAATG
gagttttttgtttctgcatgctgaagctgtcctaaccttgttaccttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG
tcctaac putative branch site (score: 35)
ccttgttttc putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgccaggaattgctaatacctttcaatgtgcaattcaaacagagttttttgtttctgcatgctgaagctgtcctaaccttgttaccttgttttcagGGAACCCTTGATAACAAATGTCATGTGGAGAAACTTAATCATAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -gtgccag
- - - - - - - tgctaat
- - - - - - - - - - - - - - aatgtgc
- - - - - - - - - - - - - - - - - - - tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa