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...cagttcttactgttgggataacgtttacagccagttctctggaatttggatgttgttgttttacatggtcttatttgcttaccggatttcgtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTGGTGCTGATCTTAGTCCTCTAGAG
species | Oryza sativa |
transcript | LOC_Os03g48300.1 |
intron # | 28 |
splice site | 3' |
intron type | U2 |
EST: ATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|29672858|gb|CB669133.1|CB669133
genomic: ATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|88974007|gb|CI002669.1|CI002669
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|89168931|gb|CI020471.1|CI020471
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|86827434|gb|CI272827.1|CI272827
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|88844694|gb|CI021269.1|CI021269
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|29674286|gb|CB670561.1|CB670561
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|29640071|gb|CB645080.1|CB645080
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|29645913|gb|CB650920.1|CB650920
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|29645535|gb|CB650542.1|CB650542
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|88839229|gb|CI000701.1|CI000701
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAGGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|86902835|gb|CI312212.1|CI312212
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|86252520|gb|CI003856.1|CI003856
genomic: AGCTTGACTACATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: TATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTEST: gi|86885163|gb|CI316923.1|CI316923
genomic: TATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGT
EST: CATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAG GTTCCTTTAGAAGATGAGAAAAGGTTCCGGAGTGAAATGACATTTAGGTCG
genomic: CATGAGTAATATTGTGCTTAGAATGTTTGAAAATACTGAGgtatggatct ... gtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTA-GTCG
ttggatgttgttgttttacatggtcttatttgcttaccggatttcgtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTGGTGCTGATCTTAGTCCTCTAGAG
tgcttac putative branch site (score: 14)
ttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagttcttactgttgggataacgtttacagccagttctctggaatttggatgttgttgttttacatggtcttatttgcttaccggatttcgtatttacagGTTCCTTTAGAAGATGAGAAAAGGTTCCGGATTGAAATGACATTTAGTCGTGGTGCTGATCTTAGTCCTCTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -ctgttgg
- - - - - - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttacatg