1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
...agaactcatatgttcatgtctacatggtcatcagatgttttgtagtctctaaattacttatataaaaatatgatgctaacataaactactttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGTGGAACGATCTATATGGAGAAGGCGGGTCCAGGAAGAAGACTTCTCTAA
species | Oryza sativa |
transcript | LOC_Os07g47530.1 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|58599941|gb|CK010469.1|CK010469
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GAACGATTTCAAACATGCACAGTGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAEST: gi|86524067|gb|CI164273.1|CI164273
genomic: GAACGATTTCAAACATGCACA-TGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCA
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|66914068|gb|CX100916.1|CX100916
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|29669557|gb|CB665832.1|CB665832
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|29632466|gb|CB637475.1|CB637475
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|58676924|gb|CK065611.1|CK065611
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|88842684|gb|CI081940.1|CI081940
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAAAATGCACATGAGCAG GTATGTGCAAGTATAAAATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|89190959|gb|CI392812.1|CI392812
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTTATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|88219604|gb|CI219164.1|CI219164
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: TTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|29685522|gb|CB681797.1|CB681797
genomic: TTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|29632742|gb|CB637751.1|CB637751
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|86906255|gb|CI320186.1|CI320186
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGEST: gi|88960303|gb|CI382181.1|CI382181
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
EST: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAG GTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
genomic: GTGATGTTCGTTCCCTAAGAATGAACGATTTCAAACATGCACATGAGCAGgtaatgttac ... ttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAG
tctctaaattacttatataaaaatatgatgctaacataaactactttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGTGGAACGATCTATATGGAGAAGGCGGGTCCAGGAAGAAGACTTCTCTAA
tgctaac putative branch site (score: 65)
ctacttt putative PPT
aaattacttatataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaactcatatgttcatgtctacatggtcatcagatgttttgtagtctctaaattacttatataaaaatatgatgctaacataaactactttatgtatagGTATGTGCAAGTATAACATCTGATTCGAGAAATATGACTGAGCTTATTCAGTGGAACGATCTATATGGAGAAGGCGGGTCCAGGAAGAAGACTTCTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - -gttcatg
- - - - - - - - - -ctacatg
- - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acataaa