1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
gtgagattcctgtcatattagacatgctttctgcaccagtattctgcaccgaagctcacgatatttgtttatacagGAGATAAAGAGTGAAGGTTACACAATGAAGTGTGCCAGATTTTGAATGGATACAAGCAG
species | Oryza sativa |
transcript | LOC_Os04g59494.4 |
intron # | 27 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGAEST: gi|29624709|gb|CB629720.1|CB629720
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGGTT-ACACAATGAAGTGTGCCAGATTTTGAATGGA
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGAEST: gi|29626308|gb|CB631319.1|CB631319
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGG-TTACACAATGAAGTGTGCCAGATTTTGAATGGA
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGAEST: gi|86437650|gb|CI119570.1|CI119570
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGG-TTACACAATGAAGTGTGCCAGATTTTGAATGGA
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGAEST: gi|29623087|gb|CB628098.1|CB628098
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGG-TTACACAATGAAGTGTGCCAGATTTTGAATGGA
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGAEST: gi|66929408|gb|CX116256.1|CX116256
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGG-TTACACAATGAAGTGTGCCAGATTTTGAATGGA
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGAEST: gi|29624359|gb|CB629370.1|CB629370
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGGTT-ACACAATGAAGTGTGCCAGATTTTGAATGGA
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGAEST: gi|58680224|gb|CK068911.1|CK068911
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGG-TTACACAATGAAGTGTGCCAGATTTTGAATGGA
EST: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAAC GAGATAAAGAGTGAAGGTTTACACAATGAAGTGTGCCAGATTTTGAATGGA
genomic: GAGCTGTGGGTTCACTAACTTTTATCTGCCAGGCCTGTGCAAGTTGGAACgtgagattcc ... gtttatacagGAGATAAAGAGTGAAGG-TTACACAATGAAGTGTGCCAGATTTTGAATGGA
acatgctttctgcaccagtattctgcaccgaagctcacgatatttgtttatacagGAGATAAAGAGTGAAGGTTACACAATGAAGTGTGCCAGATTTTGAATGGATACAAGCAG
agctcac putative branch site (score: 8)
tttgttt putative PPT
atatttgtttataca TA-rich tract