1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
...gtgcttctattatgctacttgtatcagtttctctttttatatgcactgcaatcttatgtgagtgctttgcctctttggcctttttaacttttggttgcagAGAGGTCTTATGGCCCTGATTGATGTTGAAGGAGTACCAGTTCACCTTGGAGAAATAGTGGTGGAAAATCTTATGGCCAGCTGGCAATCCATTCAGGACA
species | Oryza sativa |
transcript | LOC_Os08g02350.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: AAAGTAGCTCAGATCCGAGCACAAGCTTCAACAACAGTACCGCAATTCAG AGAGGTCCTATGGCCCTGATTGEST: gi|58605498|gb|CK033531.1|CK033531
genomic: AAAGTAGCTCAGATCCGAGCACAAGCTTCAACAACAGTACCGCAATTCAGgtggaagcat ... ttggttgcagAGAGGTCTTATGGCCCTGATTG
EST: GCTCAGATCCGAGCACAAGCTTCAACAACAGTACCGCAATTCAG AGAGGTCTTATGGCCCTGATTGATGTTGAAGGAGTACCAGTTCACCTTGGA
genomic: GCTCAGATCCGAGCACAAGCTTCAACAACAGTACCGCAATTCAGgtggaagcat ... ttggttgcagAGAGGTCTTATGGCCCTGATTGATGTTGAAGGAGTACCAGTTCACCTTGGA
ctgcaatcttatgtgagtgctttgcctctttggcctttttaacttttggttgcagAGAGGTCTTATGGCCCTGATTGATGTTGAAGGAGTACCAGTTCACCTTGGAGAAATAGTGGTGGAAAATCTTATGGCCAGCTGGCAATCCATTCAGGACA
ttttaac putative branch site (score: 17)
cctttttaactttt CT-rich tract
tttttaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttctattatgctacttgtatcagtttctctttttatatgcactgcaatcttatgtgagtgctttgcctctttggcctttttaacttttggttgcagAGAGGTCTTATGGCCCTGATTGATGTTGAAGGAGTACCAGTTCACCTTGGAGAAATAGTGGTGGAAAATCTTATGGCCAGCTGGCAATCCATTCAGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
-tgcttct
- - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - -cactgca
- - - - - - - - - - - - - - - - - - - - - - - - - -tcttatg