1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...tttctcattgattttacatgcttatatggcttttcatttatcggttttccttgctaatgtacagactgttacaattcttggtctactgttgcaaatgcagATCTTGTCAAAGACGGCTAACAATGCTGTCATGGAGACAGTCGACCCGGACATTGCAGACACTTGCAAGGATCTTGGTGAGGTCAAGAAGGTGTTCCAGC
species | Oryza sativa |
transcript | LOC_Os06g10230.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: TGCTGACCGGAAAAAAGCCAGTGGACAACGAGTGCAATCTCCATCACTTG ATCTTGTCAAAGAEST: gi|58683527|gb|CK072214.1|CK072214
genomic: TGCTGACCGGAAAAAAGCCAGTGGACAACGAGTGCAATCTCCATCACTTGgtaactatga ... gcaaatgcagATCTTGTCAAAGA
EST: TGCTGACCGGAAAAAAGCCAGTGGACAACGAGTGCAATCTCCATCACTTG ATCTTGTCAAAGACGGCTAACAATGCTGTCATGGAGACAGTCGACC
genomic: TGCTGACCGGAAAAAAGCCAGTGGACAACGAGTGCAATCTCCATCACTTGgtaactatga ... gcaaatgcagATCTTGTCAAAGACGGCTAACAATGCTGTCATGGAGACAGTCGACC
tttccttgctaatgtacagactgttacaattcttggtctactgttgcaaatgcagATCTTGTCAAAGACGGCTAACAATGCTGTCATGGAGACAGTCGACCCGGACATTGCAGACACTTGCAAGGATCTTGGTGAGGTCAAGAAGGTGTTCCAGC
tgctaat putative branch site (score: 2)
ttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctcattgattttacatgcttatatggcttttcatttatcggttttccttgctaatgtacagactgttacaattcttggtctactgttgcaaatgcagATCTTGTCAAAGACGGCTAACAATGCTGTCATGGAGACAGTCGACCCGGACATTGCAGACACTTGCAAGGATCTTGGTGAGGTCAAGAAGGTGTTCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - tacatgc
- - - - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtt