1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
...tatggaaatctaagtgaatgattcataatacaaagtatagaattatgtgctgggactgtgtgctgatctgtattcaacattttgatactgtattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAGCTCTATGGTCTGAAAAGAATTAATTTTATGGATCGGGTGGTTAACACTC
species | Oryza sativa |
transcript | LOC_Os03g11470.1 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: AAGATGCGCGCCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAG GCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAGEST: gi|88487883|gb|CI425154.1|CI425154
genomic: AAGATGCGCGCCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAGgtcagtaact ... tattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAG
EST: CCCCTAGATTTCCCAAG GCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAGEST: gi|29619778|gb|CB624790.1|CB624790
genomic: CCCCTAGATTTCCCAAGgtcagtaact ... tattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAG
EST: AAGATGCGCGCCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAG GCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAGEST: gi|29618447|gb|CB623459.1|CB623459
genomic: AAGATGCGCGCCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAGgtcagtaact ... tattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAG
EST: AAGATGCGCGCCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAG GCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAGEST: gi|88504894|gb|CI432400.1|CI432400
genomic: AAGATGCGCGCCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAGgtcagtaact ... tattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAG
EST: CCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAG GCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAG
genomic: CCGTTCAACATCAAGAGCGTTTTCCCCTAGATTTCCCAAGgtcagtaact ... tattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAG
tgtgctgggactgtgtgctgatctgtattcaacattttgatactgtattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAGCTCTATGGTCTGAAAAGAATTAATTTTATGGATCGGGTGGTTAACACTC
attttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggaaatctaagtgaatgattcataatacaaagtatagaattatgtgctgggactgtgtgctgatctgtattcaacattttgatactgtattctgtagGCAAAACAAGAAGCTTGGTGGCTGGTCCTTGGGAACATTAGAAGTTCAGAGCTCTATGGTCTGAAAAGAATTAATTTTATGGATCGGGTGGTTAACACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - tgattca
- - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - gtgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg