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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttccattatatttattgtatcttgtggttaatggctattaggaaaaccaaagttgatctcgggattttaccaaacaggttgaaagAGTACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAACAGCCTCACCTCCCGTTCCGGTGCAGCCACAGTTGCCTCCGGCGGCAGTACCTG

Basic information

species Oryza sativa
transcript LOC_Os03g02150.1
intron # 26
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 26
lower sequence: GRMZM2G137236_T01 (Zea mays), 3'ss of exon 26
----------gttccatt-atatttattgtatcttgtggttaatggctattaggaaaaccaaagttgatctcgggattttaccaaacaggttgaaagAGTACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAACAGCCTCACCTCCCGTTCCGGTGCAGCCACAGTTGCCTCCGGCGGCAGTACCTG
          | |||||| || |  ||| |   |  | | |||  |  ||| | ||  |  ||||||||     ||||||   ||||||||||||||||| |||||| |||||| |  ||||||||||||||   ||    ||| |||||| ||   | || |||||||||||||||    |  ||| |||| 
gtatagtctagctccatttatttaaattatggttcattgctaagtgtaatttgtaatgcagaagttgattgaaagattttggtaaacagGTTGAAAGAGTTCATCAAAGAACATCTGGTTGATATCCCAAGGACTCAGGTCGCCCCACCTCGCGCAGCAGTCCAGCCACAGTTGCCT---ACTACAGCACCT-

upper sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 26
lower sequence: GRMZM2G092741_T01 (Zea mays), 3'ss of exon 11
----------gttccattatattta-ttgtatcttgtggttaatggctattaggaaaaccaaagttgatctcgggattttaccaaacaggttgaaagAGTACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAACAGCCTCACCTCCCGTTCCGGTGCAGCCACAGTTGCCTCCGGCGGCAGTACCTG
          | ||| ||   || | || |  ||| | | |||  |||| | ||||  | |||  ||||   | | ||||   ||||||||||||||||| | ||||||||||||| |||||||||||||||   ||  | ||| |||||   |    ||| ||||||||||||| |    | |||| |||| 
gtatagtcttgctccttttctttaaattatggcttattgctaaatgctaatgggaatgcaaaaaatgattgggtggttttggtaaacagGTTGAAAGAGTTCGTCAAGGAACATTTGATTGATATCCCAAGGACTCAGGCTGCCCCACCTATGGCAATGGTCCAGCCACAGTTGCTT---ACTGCAGCACCT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163923306|gb|EG709361.1|EG709361
EST:     GGCTCACAGTGGCATCAGGAGATCAGTATTTGACATTCGAGTTGAA-AG-                         AGTACATCAAGGAACATTTAATTGATATC
genomic: GGCTCACAGTGGCATCAGGAGATCAGTATTTGACATTCGAGTA-AATATCgttccattat ... aggttgaaagAGTACATCAAGGAACATTTAATTGATATC
EST: gi|86900137|gb|CI300180.1|CI300180
EST:     GGCTCACAGTGGCATCAGGAGATCAGTATTTGACATTCGAGTTGAA-AG-                         AGTACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAAC
genomic: GGCTCACAGTGGCATCAGGAGATCAGTATTTGACATTCGAGTA-AATATCgttccattat ... aggttgaaagAGTACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAAC
EST: gi|66918984|gb|CX105832.1|CX105832
EST:     GCTCACAGTGGCATCAGGAGATCAGTATTTGACATTCGAGTTGAAAGA-C                         --TACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAACAGCCTCA
genomic: GCTCACAGTGGCATCAGGAGATCAGTATTTGACATTCGAGT--AAATATCgttccattat ... aggttgaaagAGTACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAACAGCCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggctattaggaaaaccaaagttgatctcgggattttaccaaacaggttgaaagAGTACATCAAGGAACATTTAATTGATATCCCAAGGGTACAAACAGCCTCACCTCCCGTTCCGGTGCAGCCACAGTTGCCTCCGGCGGCAGTACCTG
                                 atttta  TA-rich tract