1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
...aatacacgatattctgcaaaaagattccatagtatcacttgtcttaccttttcatattcataacatgccttttgtcattgatttctgcaaatgcagacagATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAATTCCATTTGTGCCTGCTGCAATGCAAACGGCAGATGCAACCTCCTCTCTTCCTG
species | Oryza sativa |
transcript | LOC_Os01g49940.2 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAATEST: gi|29622215|gb|CB627226.1|CB627226
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
EST: TCTTTGTTCCTTTG-TAATCAGCGGAACATGCACAGCATCTTGCCCAGACAGEST: gi|27577961|gb|CB000656.1|CB000656
genomic: TCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTG-CC---CAGgtactttccc ... atgcaga
EST: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAATEST: gi|87004655|gb|CI300977.1|CI300977
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
EST: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAEST: gi|163925961|gb|EG714989.1|EG714989
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCA
EST: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG ATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCEST: gi|300215772|gb|HO088398.1|HO088398
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACC
EST: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAG ACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
genomic: CCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttccc ... atgcagacagA----TTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAAT
accttttcatattcataacatgccttttgtcattgatttctgcaaatgcagacagATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAATTCCATTTGTGCCTGCTGCAATGCAAACGGCAGATGCAACCTCCTCTCTTCCTG
atattcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatacacgatattctgcaaaaagattccatagtatcacttgtcttaccttttcatattcataacatgccttttgtcattgatttctgcaaatgcagacagATTTTGAAAGTTCTGGGCTTCATCAATGAACCGCACCAGGCACCAATTCCATTTGTGCCTGCTGCAATGCAAACGGCAGATGCAACCTCCTCTCTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - -ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgc