Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccgactgccaactcattgcacagtttgattgtcattgcaatttgcacagaagcaccaacatgccattctcaaaagcatgatatttgacacattgatatttgcttctgttgattgcaataccaaattgttacatgacatcttgttaccatgttaaaatcttttttttcattattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTGCTCTAGGTGCGGCCCAAGGCCTTGCTTATCTTCATCATGACTGTAGCCC

Basic information

species Oryza sativa
transcript LOC_Os06g10230.1
intron # 25
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g10230.1 (Oryza sativa), 3'ss of exon 25
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 25
gtaagtgccgactgccaactcattgcacagtttgattgtcattgcaatttgcacagaagcaccaacatgccattctcaaaagcatgatatttgacacattgatatttgcttctgttgattgcaataccaaattgttacatgacatcttgttaccatgttaaaatcttttttttcattattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTGCTCTAGGTGCGGCCCAAGGCCTTGCTTATCTTCATCATGACTGTAGCCC---
                                                                                |  ||||| |||||    | || ||    |||     | | |  | |  |||    | | |||  | | ||    | |  || || |  |||||  |||  |   ||| || || ||||||||||| |||||||||||||||||||| |  ||||| || || || || ||||| |||||||| ||||| ||||| ||||||||   
--------------------------------------------------------------------------------attatgatgtttgattt-tagagatacaattc-acaaactac--tgcttaatatacata-gactgcatattcttctatctaattcctcattttc--tatcttcttagGCCCTACAAAGAAGAAAAAGCTTGATTGGGAAACTCGTCTTCAGATTGCACTTGGAGCAGCTCAAGGGCTTGCTTACCTTCACCATGATTGTAGCCCTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58683879|gb|CK072566.1|CK072566
EST:     TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATG                         AAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
genomic: TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATGgtaagtgccg ... attattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
EST: gi|58653167|gb|CK041847.1|CK041847
EST:     TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATG                         AAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
genomic: TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATGgtaagtgccg ... attattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
EST: gi|58666076|gb|CK054762.1|CK054762
EST:     TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATG                         AAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
genomic: TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATGgtaagtgccg ... attattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
EST: gi|58653035|gb|CK041715.1|CK041715
EST:     TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTCGCATG                         AAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
genomic: TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATGgtaagtgccg ... attattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
EST: gi|58678485|gb|CK067172.1|CK067172
EST:     TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATG                         AAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
genomic: TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATGgtaagtgccg ... attattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
EST: gi|58683527|gb|CK072214.1|CK072214
EST:     TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATG                         AAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
genomic: TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATGgtaagtgccg ... attattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
EST: gi|58686490|gb|CK075177.1|CK075177
EST:     TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATG                         AAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG
genomic: TCTCTTCTACGATTACATGGAAAATGGAAGCCTCTGGGATGTTTTGCATGgtaagtgccg ... attattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgttacatgacatcttgttaccatgttaaaatcttttttttcattattctagAAGGTCCAACTAAGAAGAAAAAACTTGATTGGGAAACTCGTCTACGAATTGCTCTAGGTGCGGCCCAAGGCCTTGCTTATCTTCATCATGACTGTAGCCC
                                  tcttttttttcattat  CT-rich tract
                         atgttaaaatcttttt  TA-rich tract