1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtacaataattaacacctaccttcattttattatgctatatttttaatctatgttgtgtacccttcaacagtaacttacatactgctggttcttattctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTGTGCTGATGCTGGCTTCGTTTGAGAAAACAGCGGAGCATCTCTTTAATG
species | Oryza sativa |
transcript | LOC_Os04g41490.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAG GGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTACTEST: gi|396941292|gb|HO188501.1|HO188501
genomic: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAGgtacaataat ... ctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGT
EST: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAG GGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTEST: gi|86539733|gb|CI179939.1|CI179939
genomic: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAGgtacaataat ... ctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGT
EST: TATTGATTCGAGACATATGATGCTTCTGGCAGA-TTGTATGACATACAAG GGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTEST: gi|88368598|gb|CI675145.1|CI675145
genomic: CATTGATTCGAGACATATGATGCTTCTGGCAGATTTG-ATGACATACAAGgtacaataat ... ctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGT
EST: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAG GGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTEST: gi|58691524|gb|CK080211.1|CK080211
genomic: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAGgtacaataat ... ctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGT
EST: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAG GGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTEST: gi|396941602|gb|HO188259.1|HO188259
genomic: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAGgtacaataat ... ctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGT
EST: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAG GGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGT
genomic: ACATTGATTCGAGACATATGATGCTTCTGGCAGATTTGATGACATACAAGgtacaataat ... ctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGT
gttgtgtacccttcaacagtaacttacatactgctggttcttattctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTGTGCTGATGCTGGCTTCGTTTGAGAAAACAGCGGAGCATCTCTTTAATG
aacttac putative branch site (score: 4)
ttcttattctcc putative PPT
ttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaataattaacacctaccttcattttattatgctatatttttaatctatgttgtgtacccttcaacagtaacttacatactgctggttcttattctccgagcagGGTGAAATTCTTGGCATTACTAGATATGGTATTGCAAAAATGAAAAGTAGTGTGCTGATGCTGGCTTCGTTTGAGAAAACAGCGGAGCATCTCTTTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA