1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
...gagcgcatggttttcagaaccagctttattttttctccataaagaatagcttattcctttcactgatatttttgacacttgttatgcttctcacgtgtagGCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCCCTTGGAGAATTGATGTATCAG
species | Oryza sativa |
transcript | LOC_Os02g04840.1 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: GTGTGAAGGCTCCTACTAGACATCCTATATACGAGAACTTCCGAGTTGAG GCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCCEST: gi|33380909|gb|CF196252.1|CF196252
genomic: GTGTGAAGGCTCCTACTAGACATCCTATATACGAGAACTTCCGAGTTGAGgtttgatatc ... tcacgtgtagGCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCC
EST: GTGTGAAGGCTCCTACTNNACATCCTATATACGNNNACTTCCGAGTTGAG GCCTTCNNNGCATTGCTAACAGCAGEST: gi|38475023|gb|CF959156.1|CF959156
genomic: GTGTGAAGGCTCCTACTAGACATCCTATATACGAGAACTTCCGAGTTGAGgtttgatatc ... tcacgtgtagGCCTTCAAAGCATTGCTAACAGCAG
EST: GTGTGAAGGCTCCTACTAGACATCCTATATATGAGAACTTCCGAGTTGAG GCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCC
genomic: GTGTGAAGGCTCCTACTAGACATCCTATATACGAGAACTTCCGAGTTGAGgtttgatatc ... tcacgtgtagGCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCC
atagcttattcctttcactgatatttttgacacttgttatgcttctcacgtgtagGCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCCCTTGGAGAATTGATGTATCAG
ttctcac putative branch site (score: 3)
tgcttctc CT-rich tract
tgatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcgcatggttttcagaaccagctttattttttctccataaagaatagcttattcctttcactgatatttttgacacttgttatgcttctcacgtgtagGCCTTCAAAGCATTGCTAACAGCAGCCAAAACAGTTGAGCAACTTTCGGCCCTTGGAGAATTGATGTATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- gcgcatg
- - - - - - - - -aaccagc
- - - - - - - - - - - - - - - - - ctccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcttc