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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaaaacaggaccctgactcattacgcttttaagaaatgcaattcagattatatttatcctgacctgtcttctcttttccattttgtagTTCTTTCACGTTCGTGCAATTTCTAGCCATATGGGGAAACTTCATCGCGTTCTACATCATAAATTTCTTCATCAGCAGTATACCATCTGCTGGGATGTAC

Basic information

species Oryza sativa
transcript LOC_Os11g25980.2
intron # 24
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g25980.2 (Oryza sativa), 3'ss of exon 24
lower sequence: GRMZM2G479163_T01 (Zea mays), 3'ss of exon 6
gtaggaaaacaggaccctgactcattacgcttttaagaaatgcaattcagattatatttatcc-tgacctgtcttctcttttccattttgtagTTCTTTCACGTTCGTGCAATTTCTAGCCATATGGGGAAACTTCATCGCGTTCTACATCATAAATTTCTTCATCAGCAGTATACCATCTGCTGGGATGTAC
                |  | |    | |||||  |       || | |||   ||||| ||  ||  |  | ||    ||| || || | ||||| ||||| |  |||||| |||| ||||||||||||||| |||| || |||||  || | |||||||| ||||||||||||||  || |||| ||||||
-------------gtacgaattagaaaagcttt--atcctcctaactaagaac-tatttgtcagtggtccttatttgtcttttcactt-gcagTTCCTTCACATCTGTGCAACTTCTGGCCATATGGGGAAACCTCATTGCCTTCTATGTCCTCAATTTCTTTATCAGCAGTATACCCACTTCTGGAATGTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgcaattcagattatatttatcctgacctgtcttctcttttccattttgtagTTCTTTCACGTTCGTGCAATTTCTAGCCATATGGGGAAACTTCATCGCGTTCTACATCATAAATTTCTTCATCAGCAGTATACCATCTGCTGGGATGTAC
                       tcctgac  putative branch site (score: 2)
                       tcctgacctgtcttct  CT-rich tract
      aattcagattatattt  TA-rich tract