1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...tgtagggtcaagcttatagctagcttatttttttgttcttaaaccagtttttttattctaattattgaactgaatttattcttttcttttctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGTGATGCTGTGCCGTTTGAGCTTTGATCTTATCATATCCTTCAACTGAAC
species | Oryza sativa |
transcript | LOC_Os06g05180.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|86838811|gb|CI330259.1|CI330259
genomic: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: CCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|58664253|gb|CK052939.1|CK052939
genomic: CCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|11370679|gb|AU164984.1|AU164984
genomic: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: AGTGGGGTACGAACAATGAAGGAA-TTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|319908442|gb|HS977570.1|HS977570
genomic: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: GGTACCAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCCGTGCCGTTTTGCATTGGEST: gi|25803773|gb|CA759734.1|CA759734
genomic: GGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: AGTGGGGTACGAACAATGAAGGAACTTTGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGEST: gi|319908460|gb|HS977588.1|HS977588
genomic: AGTGGGGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
EST: GGTACNAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTG TGCTAACTGAACATGAGTAAGGACCAAGGATGCCGTGCCGTTTTGCATTGG
genomic: GGTACGAACAATGAAGGAACTTCGTCAGCCTAAAAGAATTGTTTGgcaagtgtaa ... ctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGG
agtttttttattctaattattgaactgaatttattcttttcttttctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGTGATGCTGTGCCGTTTGAGCTTTGATCTTATCATATCCTTCAACTGAAC
ttctaat putative branch site (score: 2)
ctgaatttattctttt putative PPT
ttttattctaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagggtcaagcttatagctagcttatttttttgttcttaaaccagtttttttattctaattattgaactgaatttattcttttcttttctccttgcagTGCTAACTGAACATGAGTAAGGACCAAGGATGCTGTGCCGTTTTGCATTGGTGATGCTGTGCCGTTTGAGCTTTGATCTTATCATATCCTTCAACTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT