1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gttagggcttgaaacctttggctcatggataatttgttatcattatgcatctcccttatgatctatatatgatccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGTCGGAGCTGCACAAGGGCTGGCCTATCTCCACCATGACTGCAACCCTCG
species | Oryza sativa |
transcript | LOC_Os06g03970.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGAEST: gi|58662405|gb|CK051091.1|CK051091
genomic: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGA
EST: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGEST: gi|2317603|gb|C22657.1|C22657
genomic: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
EST: TGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGEST: gi|58660475|gb|CK049155.1|CK049155
genomic: TGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
EST: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGEST: gi|58676259|gb|CK064946.1|CK064946
genomic: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
EST: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGEST: gi|58674406|gb|CK063092.1|CK063092
genomic: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
EST: CTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGEST: gi|58597993|gb|CK008521.1|CK008521
genomic: CTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
EST: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGEST: gi|88419605|gb|CI686823.1|CI686823
genomic: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
EST: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACG GTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
genomic: GCTCTTCTATGATTACATGGAAAATGGTTCCTTGTGGGATCTTCTCCACGgttagggctt ... tccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGG
gataatttgttatcattatgcatctcccttatgatctatatatgatccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGTCGGAGCTGCACAAGGGCTGGCCTATCTCCACCATGACTGCAACCCTCG
tccttttc CT-rich tract
ttatgatctatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagggcttgaaacctttggctcatggataatttgttatcattatgcatctcccttatgatctatatatgatccttttcagGTCCATCAAAGAAAGTGAAGCTCAACTGGGACACAAGACTGAGGATCGCGGTCGGAGCTGCACAAGGGCTGGCCTATCTCCACCATGACTGCAACCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC