1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtaagtgttatttacatcgcattctgttcatctttactagaaccacacactgttttggttattacagtaaagtaggacctcacccacttgtttttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATATGCATTTAGGGAGCTCATTTGGAGGTTGACATGAAACCCAAGGGGAAACC
species | Oryza sativa |
transcript | LOC_Os05g05780.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: GCTCTTCCAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCG GGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCACCCCATATEST: gi|29632572|gb|CB637581.1|CB637581
genomic: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCGgtaagtgtta ... tttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATAT
EST: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCG GGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATATEST: gi|87004422|gb|CI298954.1|CI298954
genomic: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCGgtaagtgtta ... tttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATAT
EST: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCG GGAAGGAGAAGGCGAGGGTGATCTGATTATCGTTCGTTCCTCCCCCCATATEST: gi|218488523|gb|FG953156.1|FG953156
genomic: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCGgtaagtgtta ... tttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATAT
EST: GCTCTTCCAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCG GGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATATEST: gi|88982029|gb|CI027606.1|CI027606
genomic: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCGgtaagtgtta ... tttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATAT
EST: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCG GGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATATEST: gi|27577440|gb|CB000135.1|CB000135
genomic: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCGgtaagtgtta ... tttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATAT
EST: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCG GGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTGCCTCCCCCCATAT
genomic: GCTCTTCGAAGAGGAGGCGCCAGTCCTACACTGAAGCCAATGCAGGCTCGgtaagtgtta ... tttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATAT
cactgttttggttattacagtaaagtaggacctcacccacttgtttttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATATGCATTTAGGGAGCTCATTTGGAGGTTGACATGAAACCCAAGGGGAAACC
acctcac putative branch site (score: 14)
cctcacccacttgttt CT-rich tract
ttattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttatttacatcgcattctgttcatctttactagaaccacacactgttttggttattacagtaaagtaggacctcacccacttgtttttctcacagGGAAGGAGAAGGCGAGGGTGATCTGATTATTGTTCGTTCCTCCCCCCATATGCATTTAGGGAGCTCATTTGGAGGTTGACATGAAACCCAAGGGGAAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG