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...aaagtgcatattatctttgtttgctcagccaatgtttcttttgttcaaacttatttttaacagacaagttattaaccattatatgttccttgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAGTTTGCTCTAGGCCTGACTGATGGTGGTGTTTATGTATTGGAACCCTTG
species | Oryza sativa |
transcript | LOC_Os03g14980.2 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|27554431|gb|CA998331.1|CA998331
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTNCAA-TGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCEST: gi|58585882|gb|CF984190.1|CF984190
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCT-CAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATC
EST: GACTCCAATGTCGAATTCTTGCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|58694783|gb|CK083470.1|CK083470
genomic: GACTCCAATGTCGAATTCTT-CCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|29672341|gb|CB668616.1|CB668616
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|86851209|gb|CI312610.1|CI312610
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGAAAGCAAATCAEST: gi|29629470|gb|CB634479.1|CB634479
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|29680681|gb|CB676956.1|CB676956
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|58694029|gb|CK082716.1|CK082716
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|218501279|gb|FG957977.1|FG957977
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|89167843|gb|CI021542.1|CI021542
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: TCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|218487225|gb|FG954419.1|FG954419
genomic: TCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|29622175|gb|CB627186.1|CB627186
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTGGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|88975023|gb|CI023274.1|CI023274
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: TCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|163925572|gb|EG713389.1|EG713389
genomic: TCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: CCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|29666551|gb|CB662826.1|CB662826
genomic: CCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|29673861|gb|CB670136.1|CB670136
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAEST: gi|29628403|gb|CB633414.1|CB633414
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
EST: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAG CTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
genomic: AGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctaca ... tgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCA
caaacttatttttaacagacaagttattaaccattatatgttccttgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAGTTTGCTCTAGGCCTGACTGATGGTGGTGTTTATGTATTGGAACCCTTG
tattaac putative branch site (score: 1)
tgttccttgtttcct putative PPT
ttattaaccattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtgcatattatctttgtttgctcagccaatgtttcttttgttcaaacttatttttaacagacaagttattaaccattatatgttccttgtttcctagCTCAAATGTTTATCCTGTCGTTGTGGCGGCACATCCTTCGGAAGCAAATCAGTTTGCTCTAGGCCTGACTGATGGTGGTGTTTATGTATTGGAACCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -gtgcata
- - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acagaca