1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaagaacataacatttttcacatcatatgcatgtgcggttcaattttgtgcgaaacagtgcaaattagacctattccagtggtcaaattatgccttttgaaagtgattagaaaaactgttagtcagaattttttaattgataattacgtgttcactgttcattcctcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAACCCTCAAAAGTCTGGTTTTGTGTTTGGCAAATTGAAGTGCCTAACAGCAC
species | Oryza sativa |
transcript | LOC_Os02g51430.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAG GTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAACEST: gi|88486087|gb|CI423358.1|CI423358
genomic: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAGgtaagaacat ... tcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAAC
EST: AAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAG GTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAACEST: gi|88418936|gb|CI508889.1|CI508889
genomic: AAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAGgtaagaacat ... tcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAAC
EST: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAANCCAAAGAG GTTGTACAAGAGTGCAAGGAAATATACGAGAACTTTCTTTTAGACGGGAACEST: gi|86482093|gb|CI124726.1|CI124726
genomic: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAGgtaagaacat ... tcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAAC
EST: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCCAAGAG GTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAACEST: gi|86855814|gb|CI271033.1|CI271033
genomic: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAGgtaagaacat ... tcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAAC
EST: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAG GTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAAC
genomic: AGAAGCTTGTGGGAATGAGGGAAGGCATTCCAAGGAAGGAAGCCAAAGAGgtaagaacat ... tcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAAC
agtcagaattttttaattgataattacgtgttcactgttcattcctcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAACCCTCAAAAGTCTGGTTTTGTGTTTGGCAAATTGAAGTGCCTAACAGCAC
ttcattcctcgttctt CT-rich tract
aattttttaattgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacataacatttttcacatcatatgcatgtgcggttcaattttgtgcgaaacagtgcaaattagacctattccagtggtcaaattatgccttttgaaagtgattagaaaaactgttagtcagaattttttaattgataattacgtgttcactgttcattcctcgttcttagGTTGTACAAGAGTGCAAGGAAATATACGAGAACTCTCTTGTAGACGGGAACCCTCAAAAGTCTGGTTTTGTGTTTGGCAAATTGAAGTGCCTAACAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG