1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
...tctgaccagttttcttagacagtttgaacataggagcaaattttgtgcttgctatacattagttgttgatgttttctaactactgtcttgccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG
species | Oryza sativa |
transcript | LOC_Os02g11830.2 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: CGAGGGACAGTGGN TATTNACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGEST: gi|88281294|gb|CI402690.1|CI402690
genomic: CGAGGAACAGTGGGgtacgaacaa ... ccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTG
EST: TGATACCGAGGAACAGTGGG TATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGEST: gi|86430195|gb|CI082618.1|CI082618
genomic: TGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTG
EST: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGG TATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGEST: gi|27576683|gb|CA999377.1|CA999377
genomic: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTG
EST: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGG TATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGEST: gi|86479335|gb|CI121968.1|CI121968
genomic: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTG
EST: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGG TATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGEST: gi|88828940|gb|CI073810.1|CI073810
genomic: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTG
EST: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGG TATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGEST: gi|88519824|gb|CI447478.1|CI447478
genomic: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTG
EST: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGG TATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGEST: gi|89187347|gb|CI047414.1|CI047414
genomic: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTG
EST: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGG TEST: gi|89187347|gb|CI047414.1|CI047414
genomic: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcag-
EST: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGG T
genomic: GACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaa ... ccttttgcag-
tgcttgctatacattagttgttgatgttttctaactactgtcttgccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG
ttctaac putative branch site (score: 11)
ctgtcttgcctttt putative PPT
tatacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaccagttttcttagacagtttgaacataggagcaaattttgtgcttgctatacattagttgttgatgttttctaactactgtcttgccttttgcagTATTGACTCCTGACCAATAGTGAATCAGCGGGACAGCAACCTGATACACTGATTCAGCTTGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - -gaacata
- - - - - - - - - - - - - - - - -gagcaaa
- - - - - - - - - - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg