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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA

Basic information

species Oryza sativa
transcript LOC_Os11g43970.1
intron # 23
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G126453_T02 (Zea mays), 3'ss of exon 8
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatg-atccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||||||   ||||     |||   |         ||||| |    |   | ||| ||||  | | |       |   || ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||
gtatgc--aagcacacaagtttact---------ttagtaaccactaccggcacagtatataccaactttttttttgactttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCGCACTA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G052403_T01 (Zea mays), 3'ss of exon 14
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||||||   ||||    ||||           ||||||| |    | | |  || || |   ||| ||    |   || ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||
gtatgc--aagcagacaggtta----------cattagtaaacactgttggtacagtgtacacca-actgtctttgactttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGACTGCGCACTA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G435582_T01 (Zea mays), 3'ss of exon 3
gtatgcttgagcatgtgggttggttttattg-tcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||||||   ||||     |||   |||| |  ||| ||  |    | |   |  |    |  |   |      |   || ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || | |||||
gtatgc--aagcacacaagtttactttagtaatcactaccggcacagtatataccaacttctttttt------tttgactttctgcagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCACACTA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GRMZM2G354532_T01 (Zea mays), 3'ss of exon 2
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatcca--tacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||||||   ||||     |||   |         ||||| |    |   | ||| ||||   |||  | |    |   || ||  | |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||
gtatgc--aagcacacaagtttact---------ttagtaaccactaccggcacagtatataccaacttctttttttgactttctggagGTCGATAGTATGCTAGGAAGGAGAGAAAATCCAGGGGAGCATGAAGCGATGCACAAGATGAAGAATGAATTTATGGTAAATTGGGATGGGTTGCGCACTA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA02G17410.1 (Glycine max), 3'ss of exon 18
---------gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaat----gcaacatttg--gcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
           |   || |   |     ||  | |  | |  | ||  |||||  || ||  |   || |||  |    | |    |   || |||  |||||||||||||||||| || ||  | || || ||  | |||||||| || ||||| || |||||||| || |||||||| |||||||||||  | || || |
tgaagaactaaacatttaaatctcatattttttatggtagctactatggattttcttagtttca--attatctgtgttgatttgttgtggcaattgtggcagGTTGATAGTATGCTTGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA10G02410.1 (Glycine max), 3'ss of exon 19
-------gtatgcttgagcat-gtgggttggttttattgtcattagtgatttatttggtcacggt-----atgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
         ||  |  |   | |||  ||  |||  | |    ||  ||| |  || ||  |  |      || |  ||      ||  ||   |||||||||||||||||| |||||||  | || ||||| || |||||||| || ||||| || ||||| || ||||| ||||| ||||||||||| || || || |
ggcttaaacatattcaaatctagtgtttttctttggtagcttctacggatattcttagtttcaattatctgtgtttgatttgctgtgttactgatggcagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGAACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 23
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggca--gGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||| || |     | |   |    ||  ||   || | |     |  ||   |    || |   | |   | |    | | | | |  ||||||||| ||| | || ||||| || ||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |
gtaagccttt-tgtataaatgttcttagtttgtatcaattcaacagctgaaaaataaatcagtgaaaactagtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA04G37050.1 (Glycine max), 3'ss of exon 6
gtatgc-ttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaa----tgcaacatttggca--gGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||| || ||  |||     |||  ||| |||   || |   ||| || || |  |   || |  ||   ||||    |    | | | | |  ||||||||| ||| | || ||||| || ||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||| |||||||| |||||||| |
gtaagccttttgcacaaatgtt--tttaatttgtatca---attcatctgct-gcaaaataaatcagttaaaacttgtatggcttcttgtatagGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGCACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA05G03270.1 (Glycine max), 3'ss of exon 19
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaat-gcaacatttgg--cagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
                  ||  |  || ||  | | || |  || ||| ||   | |    |  ||  ||  |  | |  ||||   |||||||| || ||| | ||  | || || || ||||| |||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |
------------------gtaagcctt-ttaacttaagggtattgttttgtattgattcattggatgtaactttactagctttgtttcagGTTGACAGCATGTTGGGTCGTAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGCTTACGCACGA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA10G02400.1 (Glycine max), 3'ss of exon 22
---------gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaat----gcaacatttg--gcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
           |   || |   |     ||  | | || |  | ||   ||||  || ||  |   || |||  |    | |    |   || |||  ||||||||||||||||||||| ||  | || || ||  | |||||||| || ||||| || |||||||| || |||||||| |||||||||||  | || || |
tgaagacctaaacatttaaatctccaattttttatgatagctactatgaattttcttagtttca--attatctgtgttgatttgttgtggcaattgtggcagGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA17G13850.1 (Glycine max), 3'ss of exon 21
gtatgcttgagcatgtgggttggttttattgtcat-tagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
       | ||| | |          ||||||  | || ||||| |||   |      || | |  ||| |   ||    |||  |||||||| || ||| | ||  |||| || || ||||| |||||||| || ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |
------gtaagccttttaaccaagggtattgtgttgtattgattcattgaat------ataa-ctttacta---gctttgttt--cagGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGCACGA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: GLYMA02G17400.1 (Glycine max), 3'ss of exon 19
------gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggt-----atgatccatacaaaatgcaacatt--tggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
      | || |   | |  |||  ||  |||  | |    ||  ||| |  ||| |  |  |      || |  ||      ||  |||||  |||||||||||||||||| |||||||  | || ||||| || || ||||| || ||||| || ||||| || ||||| ||||| ||||||||||| ||  | || |
aaatgagcattcagaatctagtgtttttctttggtagcttctacagatattcttgctttcaattatctgtgtttgatttgttttgtgacattggtggcagGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAACATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGAGAACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT1G02890.2 (Arabidopsis thaliana), 3'ss of exon 21
-----gtatgct--tgagcatgtgggttggttttattgtc-----atta--gtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
     ||||| |  |   | |   |    | | |  |  |     ||||  ||   || ||   ||    |||  |    ||   || ||| |||  | |||||||||| ||||| |||||  | ||||||||||| || |||||||| ||||| |||||||| |||||||| ||| | || ||||| || |||||||| |
atgaggtatgttgctagacgttaagaacagctctcatacctgtttattacagttcctttttctttctgaatatcttttgaacgggat-caaaattatgtagGTTGATAGCATGCTGGGAAGACGTGAGAATCCAGGAGAACATGAAGCTATGCGTAAGATGAAGAACGAATTCATGATAAACTGGGACGGCTTACGCACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT1G02890.1 (Arabidopsis thaliana), 3'ss of exon 22
gtatgct--tgagcatgtgggttggttttattgtc-----atta--gtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||||| |  |   | |   |    | | |  |  |     ||||  ||   || ||   ||    |||  |    ||   || ||| |||  | |||||||||| ||||| |||||  | ||||||||||| || |||||||| ||||| |||||||| |||||||| ||| | || ||||| || |||||||| |
gtatgttgctagacgttaagaacagctctcatacctgtttattacagttcctttttctttctgaatatcttttgaacgggat-caaaattatgtagGTTGATAGCATGCTGGGAAGACGTGAGAATCCAGGAGAACATGAAGCTATGCGTAAGATGAAGAACGAATTCATGATAAACTGGGACGGCTTACGCACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 3'ss of exon 22
gtatgcttgagcatgtgggttggttttat--------tgtcattagtga------tttatttggtcacggtat-gatccatacaaaatgcaa---catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||||| ||||  || |      |  || |        |  ||    |||      | | |||    ||  | | ||||     |   || ||   ||||   ||||||||||| ||| | || ||  | || ||||||||||| |||||||| ||||| |||||||| ||||| || ||||| || |||||||| ||| | || |
gtatgtttgaagatattaaaaagcgttctctgttctctcccacctttgaagccagtctttttatgtactttctcgatctgatgattgtggaaaatcattattcagGTTGATAGCATGTTGGGTAGACGTGAAAATCCAGGGGAACATGAAGCTATGCGTAAGATGAAGAACGAGTTCATGGTAAACTGGGATGGTTTAAGAACAA

upper sequence: LOC_Os11g43970.1 (Oryza sativa), 3'ss of exon 23
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 23
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
||  ||||   ||| |   |    ||| |  | ||   |  |||  ||  || | |  || |  || |    |      ||    |||||||||| ||||| ||  |||| |||||||||||||| ||||| || ||||| ||||||||||||||||||||||| || |||||||| || ||||| |
gtgagctt---catataact---ctttttgtttatatattgtttgcttcctctctgcttgctatattctttgtttggtctt----agGTTGATAGCATGCTGGGCCGGAGGGAGAATCCAGGGGAACATGAGGCCATGCGTAAGATGAAAAACGAATTTATGGTCAACTGGGATGGCTTGCGCACAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684670|gb|CK073357.1|CK073357
EST:     TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
EST: gi|58691499|gb|CK080186.1|CK080186
EST:     -TTTCTCATTA-CAAGT-AAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
EST: gi|58692889|gb|CK081576.1|CK081576
EST:     TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGC
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGC
EST: gi|58607816|gb|CK035849.1|CK035849
EST:     TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
EST: gi|163926070|gb|EG715026.1|EG715026
EST:     TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
EST: gi|218497816|gb|FG965087.1|FG965087
EST:     TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
EST: gi|66922707|gb|CX109555.1|CX109555
EST:     TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
EST: gi|86831749|gb|CI301599.1|CI301599
EST:     TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAG                         GTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG
genomic: TTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 70 (downstream exon)
Score: 43

TGGTTTGGCGAAGGAGAGAAATATGTAAAAGCTGTTTTCTCATTAGCAAGTAAAATAGCTCCAAGCGTTATATTCATTGATGAGgtatgcttga ... catttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA
      tgatttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcttgagcatgtgggttggttttattgtcattagtgatttatttggtcacggtatgatccatacaaaatgcaacatttggcagGTTGATAGTATGCTAGGAAGGAGAGAGAATCCAGGGGAGCATGAAGCGATGCGCAAGATGAAAAACGAATTTATGGTGAATTGGGATGGATTACGCACTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA