1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gttagtgttatattctttttatttggtcaatataaattacttgtgaacttcttaatgtcaacagcaatattttgtaattaattcagGAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAGGAAGAGCAGTTAGAGCAGTTACCTGCTGATGGCTAAAAGGTTGATGTTA
species | Oryza sativa |
transcript | LOC_Os11g42420.2 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAG GAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAGEST: gi|29669547|gb|CB665822.1|CB665822
genomic: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAGgttagtgtta ... attaattcagGAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAG
EST: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAG GAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAGEST: gi|58665324|gb|CK054010.1|CK054010
genomic: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAGgttagtgtta ... attaattcagGAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAG
EST: TTCCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAG GAATTCCTGCTTTTEST: gi|86481393|gb|CI124026.1|CI124026
genomic: TTC-ATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAGgttagtgtta ... attaattcagGAATTCCTGCTTTT
EST: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAG GAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAGEST: gi|218482307|gb|FG954939.1|FG954939
genomic: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAGgttagtgtta ... attaattcagGAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAG
EST: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAG GAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAG
genomic: CTTCATCGGAATCTGGAATAATGCATTTGTTCAGCCAACAGCAGTTGCAGgttagtgtta ... attaattcagGAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAG
ataaattacttgtgaacttcttaatgtcaacagcaatattttgtaattaattcagGAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAGGAAGAGCAGTTAGAGCAGTTACCTGCTGATGGCTAAAAGGTTGATGTTA
aattaat putative branch site (score: 15)
aatattttgtaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgttatattctttttatttggtcaatataaattacttgtgaacttcttaatgtcaacagcaatattttgtaattaattcagGAATTCCTGCTTTTTGAGAGAGAATGCTACCTATCTAAAATGGAGCTTGAGGAAGAGCAGTTAGAGCAGTTACCTGCTGATGGCTAAAAGGTTGATGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT